Query= MSMg01no148_i19.b1 MSMg01no148_i19.b1 CHROMAT_FILE:
MSMg01no148_i19.b1 PHD_FILE: MSMg01no148_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:29 2005
(660 letters)
>mm_chr3_42026080_42027141
Length = 1062
Score = 1228 bits (635), Expect = 0.0
Identities = 652/659 (98%), Gaps = 4/659 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgattcccttgcctctgtctctccagtgttagaattatagacatgtgtcataa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattcatgattcccctgcctctgtctctccagtgttagaattatagacatgtgtcataa 803
Query: 65 tgccttgctttcccctctaaattactaagcttctaagtcactaccagggttcagtgttat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgccttgctttcccctctaaattactaagcttctaagtcactaccagggttcagtgttat 743
Query: 125 agcaactactgttactttaattgcttaaaatgtgtgagctcagttgtctactcatttccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agcaactactgttactttaattgcttaaaatgtgtgagctcagttgtctactcatttccc 683
Query: 185 ttttttagccatttataaaaaaaaagtcagaagtatttattaatgacattaattagtttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttttttagccatttataaaaaaaaagtcagaagtatttattaatgacattaattagtttt 623
Query: 245 tgatagtaacataggtcaataaaattggtatttatttatactagcatgaatatgaaatta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgatagtaacataggtcaataaaattggtatttatttatactagcatgaatatgaaatta 563
Query: 305 tatttcagttatcatacataagaagctaattaatttatcaaaatatattttctgatagat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatttcagttatcatacataagaagctaattaatttatcaaaatatattttctgatagat 503
Query: 365 tctggggaaacgccagttctagtagttgaacaccgaccttatgtatcctgagcactccgc 424
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctggggaaa-ggcagttctagtagttgaacaccgaccttatgtatcctgagcactccgc 444
Query: 425 cactgagctgtgtctttttgtagtactactatgctgccgtgagagagttgagaattcgtc 484
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 cactgagctgtgtctttttgtagtactactatgctgccgtgaaagagttgagaattcgtc 384
Query: 485 tttcaacaaaaatttccagctttattctttagccaataatttactagtctatcaagtatc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttcaacaaaaatttccagctttattctttagccaataatttactagtctatcaagtatc 324
Query: 545 ttgaagaaagtcaaatagatagcctctgtgccccaacagttgttgaagaaataaagcaac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgaagaaagtcaaatagatagcctctgtgccccaacagttgttgaagaaataaagcaac 264
Query: 605 ttaaaaactggaggcaaacc---ccatttattctgtgcaagtatgaggacatggaagaa 660
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttaaaaactggaggcaaacccctccatttattctgtgcaagtatgaggacatggaagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1062
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1052
Effective search space: 683800
Effective search space used: 683800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_i19.g1 MSMg01no148_i19.g1 CHROMAT_FILE:
MSMg01no148_i19.g1 PHD_FILE: MSMg01no148_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:29 2005
(238 letters)
>mm_chr3_41879482_41880121
Length = 640
Score = 426 bits (220), Expect = e-124
Identities = 235/240 (97%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 1 taactctaatctgaaggtttatgggagaagatctttgcatatgcctccattttacagaga 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 taactctaatctgaaggtttatgggagaagacctttgcatatgcctccattttacagaga 260
Query: 61 agctaagtggtacatttgggaagaatcttggaattattgccttatagaacaaagccaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctaagtggtacatttgggaagaatcttggaattattgccttatagaacaaagccaaaa 320
Query: 121 actttcaactttaattttgctgagcatataaatcagaaactccactgacttg-atttaat 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 321 actttcaactttaattttgctgagcatataaatcagaaactccactgacttgtaattaat 380
Query: 180 agagag-aatctgctgagtcgaactgcccattggggccactttctaacatagcaactttc 238
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagtaatccgctgagtcgaactgcccattggggccactttctaacatagcaactttc 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 640
Length adjustment: 9
Effective length of query: 229
Effective length of database: 631
Effective search space: 144499
Effective search space used: 144499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
