BAC Information

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BAC

Clone NameMSMg01-148J17
Chromosome3 (Build37)
Map Location 76,435,897 - 76,436,553
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneSerpini1, Golph4
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148J17.T7 (MSMg01no148_j17.b1)MSMg01-148J17.TJ (MSMg01no148_j17.g1)
ACCAG351554AG351555
length680733
length of high quality
(start - end)
373 (43 - 415)657 (69 - 725)
definitionCHROMAT_FILE: MSMg01no148_j17.b1 PHD_FILE: MSMg01no148_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:33 2005CHROMAT_FILE: MSMg01no148_j17.g1 PHD_FILE: MSMg01no148_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATAGTTCGAGAATCCGCGGAAT
TCAATCTTAAAAGACACTTATTATAAAATAATACTAAAATAGAGCACGTG
GATCCATACACGAGACTAACATGGGGATAGGGTATGAGTGTACGGGCTAA
TGACAACGCCAAAGCTCCAGGAGTTGAGTTTCTGTGAAACTCTTTGCCTC
ATGAGTGCTTCTAGGTTTTGCAGCCTGTCAACCAGACTTCACTGGAGTGC
TTAGCATTTCCCAGTGTGCGTGGCAGATATCATTACTTTTTGGGCATATA
CATTTGATATTGAGATATCTTCTTTGTGGATATCTAATTTGATAAGTATG
AAGTGTGCTTCCTCGCCTCTTTGATTAATTCTTGTTAAAAGTCTATTTTG
TTAGCTATTAAAATGGCTCACACCAGTTTGTTTCTTTGGATCCATTTTCC
CTTGCCAATTTTTTTGTCCCATCCCTTTTTACTCTTGAAGGAAAAGGGCC
CAAAAATTTTAAATTCNAAAAAANNGGGTTTTTTTTCCTTAAGGAAAAGA
GNGGGGGGGGGAGGGGGGGTGCTATGAGGANNATATAAAAAAAAAAAAAG
AAATCTATAATAATAAAACCCCNNCCNCCNCCGCCCAAAACTGATTTCTG
ACNACCCATTCTCCCGGGGGGGGGGGGGGC
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACACTGTTGTGCATTCTGAAAGCATGGTCAG
AATACTCCCCTGCACTTGCTGTCTCTGTTAGGTACTGTTCAAAGGGACAT
CATTTACAGAACTATGGAGTGGTGAGAGTTTAAGCTTTTGTCACTTTACT
TATTCTGTGACACCATGCAAAGAACTTCCTATGGAGAATATAAACACCTT
CTAAATAGCCCTCCAGAAATTAGTATCTAGATTTCAAAAGAAATGTATTC
ATGAATTTTGTGTTTAAAGTGCTAGATGTAAGATCTTGTGATGTTTCTTA
CCATTCAAGCTCTTAGACAATGTTTGCTCTGTGTTTCAGTTGAAAAAAGC
TCAAAGTATGGCCAACTTTGGAGGACAGGGCTCTATAGCATGTAGCAGTG
TCTTGATGTAACTGTGTAGTGATTTTGTGATTTGGATCCCTCAAGGTTCT
AGAAGACAGTAAATTAAGGACCCTCCAAAGAACCATGCAAAACACCAGCC
AAGCTATTTTAATGATTGAGAGCAGAATAATTAGTGTGTCCAAAGTTAGT
TTAACTTTTTTCTAGGTGAGCCTTAAGGGTAAAAATGTTATATGATTGAA
ACAGTCTTGATACAGATATTCTGCTTCTCCTAATGTGCAGTCCCACATTG
CACATTATACACAATTTTTTAGCCTAAGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_j17.g1 MSMg01no148_j17.g1 CHROMAT_FILE:
MSMg01no148_j17.g1 PHD_FILE: MSMg01no148_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:33 2005
         (657 letters)



>mm_chr3_76435697_76436753
          Length = 1057

 Score = 1239 bits (641), Expect = 0.0
 Identities = 653/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacactgttgtgcattctgaaagcatggtcagaatactcccctgcacttgctgtctctgt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cacactgttgtgcattctgaaagcatggtcagaatacttccctgcacttgctgtctctgt 260

                                                                       
Query: 61  taggtactgttcaaagggacatcatttacagaactatggagtggtgagagtttaagcttt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 taggtactgttcaaagggacatcatttgcagaactatggagtggtgagagtttaagcttt 320

                                                                       
Query: 121 tgtcactttacttattctgtgacaccatgcaaagaacttcctatggagaatataaacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcactttacttattctgtgacaccatgcaaagaacttcctatggagaatataaacacc 380

                                                                       
Query: 181 ttctaaatagccctccagaaattagtatctagatttcaaaagaaatgtattcatgaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ttctaaatagccctccagaaattagtatctagatttcaaaagaaatgtatttatgaattt 440

                                                                       
Query: 241 tgtgtttaaagtgctagatgtaagatcttgtgatgtttcttaccattcaagctcttagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtttaaagtgctagatgtaagatcttgtgatgtttcttaccattcaagctcttagac 500

                                                                       
Query: 301 aatgtttgctctgtgtttcagttgaaaaaagctcaaagtatggccaactttggaggacag 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 aatgtttgctctgtgtttcagttgaaaaaagctcaaagtatggtcaactttggaggacag 560

                                                                       
Query: 361 ggctctatagcatgtagcagtgtcttgatgtaactgtgtagtgattttgtgatttggatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctctatagcatgtagcagtgtcttgatgtaactgtgtagtgattttgtgatttggatc 620

                                                                       
Query: 421 cctcaaggttctagaagacagtaaattaaggaccctccaaagaaccatgcaaaacaccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcaaggttctagaagacagtaaattaaggaccctccaaagaaccatgcaaaacaccag 680

                                                                       
Query: 481 ccaagctattttaatgattgagagcagaataattagtgtgtccaaagttagtttaacttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaagctattttaatgattgagagcagaataattagtgtgtccaaagttagtttaacttt 740

                                                                       
Query: 541 tttctaggtgagccttaagggtaaaaatgttatatgattgaaacagtcttgatacagata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttctaggtgagccttaagggtaaaaatgttatatgattgaaacagtcttgatacagata 800

                                                                    
Query: 601 ttctgcttctcctaatgtgcagtcccacattgcacattatacacaattttttagcct 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctgcttctcctaatgtgcagtcccacattgcacattatacacaattttttagcct 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)