BAC Information

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BAC

Clone NameMSMg01-148K17
Chromosome3 (Build37)
Map Location 49,300,246 - 49,413,410
singlet/doubletdoublet
Overlap geneLOC100039579
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247
Downstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148K17.T7 (MSMg01no148_k17.b1)MSMg01-148K17.TJ (MSMg01no148_k17.g1)
ACCAG351598AG351599
length733738
length of high quality
(start - end)		597 (40 - 636)537 (67 - 603)
definitionCHROMAT_FILE: MSMg01no148_k17.b1 PHD_FILE: MSMg01no148_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:38 2005CHROMAT_FILE: MSMg01no148_k17.g1 PHD_FILE: MSMg01no148_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,412,967 - 49,413,410)(49,300,246 - 49,300,782)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCC
CACATGTCTACCGATGACCGCATACCTGCAAAGATGGCTACAGAAGTTCT
GAAACCAACCACATGGGAGTGGCTGGTAGCAAGGCTTCCAAATGGCTCAT
GGCAATTTTCTTGGGACAAATGCCTGTTCTAGTTATCCTGCCCTGTGTTT
GCATATGCCTACTATCCCTCAGACCCTTAAATAAACAGAGATGGTTATTT
CTGTCATTGACATCATTCTGTCTTTTAACCTTTACTTTACTATTTCTTTA
AGTGGTTCTCAGCCATTCTCGATTCCTCTGTTGAGAATTCTATTTAATTC
TTTACCACATTTTTAAATTGGGTTATTTGGTTTATTGGGGTTTAACTTTT
TGAGTTCTTCACACATATATTGGATATTAGCCCTCTGTTGGATATAGGGT
TAATGAAGATCTTTTCCTAGTTTGTAGGCTGCCATTTTATCTTAGTGTTT
GTACCCTTTGCCTTACAGAAGCTTTTCAGTTTCATGAGGTACCATTTATC
AATTGTGGATCTTAGAGCCTGAGCCATTGGTGTTCTGTTCAGGGAATTTT
CTCATGATTCAATGTGTTCTAGACTGTTTCCTACTTTCTCTTCTATTTGA
TTCAGTCTATCCACTTTTATGTTGAGCGTCTTGATCCCCTTGGACTTGAG
CTTTGTGCAGGGTGATAATATCGATCACTCTGT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACACACAAAGCGAAGCAAACTTTTAATACCCAT
TTTGTATATGAAGGTATGACAAGAGGAGACAAGCAAGCTGTGAAGAGACA
GAGCTACGTGAATACATATAGATTTCACATTTACAGTGTCTGCCTAACTG
ACCTATCACATCCATGCCACCTACCTGACCATGTCACAAAGAAGGAAATG
AAAGAATAACCACAGAGACTTTAAAAGCTCTACCACAAAACATTATAGTG
ATGATTCCAAGAATATTGGATAGATGCAAATAAACATAATTGACATTAAA
ATTATAAGATAAGGATCAGTGTTTGTAGTGTAATGGTAGAGAGTTTACAT
GATGCCATGGCCCCAATTCCTTGAACCAGAGTATATATATGTGTATGTCG
GTGAGGGAGGGGTTTAAGATGGCTGAGTGATTGGGAGAACTTCCCCTTCT
TCTAGAGAACTTTATCAGCCTACTCACCAATATCAGCCTACTCACAACTT
GTATCTGCAGGGCACTCTTCTAGCTGATACAACTCTGTAGACACATGCAT
GGCATACAGTCACAAAACACACATATGCACTTACTCCAAATATTAAAGGT
GAATCTTTTAAAAAGCATAATACAAGAGGGATAATCACAAGAACTCTATG
CTGAATACTTTAGCTAAAGTCCATTAACTGATAAGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_k17.b1 MSMg01no148_k17.b1 CHROMAT_FILE:
MSMg01no148_k17.b1 PHD_FILE: MSMg01no148_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:38 2005
         (597 letters)



>mm_chr3_49412967_49413963
          Length = 997

 Score =  812 bits (420), Expect = 0.0
 Identities = 438/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccacatgtctaccgatgaccgcatacctgcaaagatggctacagaagttctga 63
           |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaattcccacatgtcaaaagatgaccgcatacctgcaaagatggctacagaagttctga 385

                                                                       
Query: 64  aaccaaccacatgggagtggctggtagcaaggcttccaaatggctcatggcaattttctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaccaaccacatgggagtggctggtagcaaggcttccaaatggctcatggcaattttctt 325

                                                                       
Query: 124 gggacaaatgcctgttctagttatcctgccctgtgtttgcatatgcctactatccctcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggacaaatgcctgttctagttatcctgccctgtgtttgcatatgcctactatccctcag 265

                                                                       
Query: 184 acccttaaataaacagagatggttatttctgtcattgacatcattctgtcttttaacctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acccttaaataaacagagatggttatttctgtcattgacatcattctgtcttttaacctt 205

                                                                       
Query: 244 tactttactatttctttaagtggttctcagccattctcgattcctctgttgagaattcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tactttactatttctttaagtggttctcagccattctcgattcctctgttgagaattcta 145

                                                                       
Query: 304 tttaattctttaccacatttttaaattgggttatttggtttattggggtttaactttttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tttaattctttaccacatttttaaattgggttatttggtttattggggtttaactttttg 85

                                                                       
Query: 364 agttcttcacacatatattggatattagccctctgttggatatagggttaatgaagatct 423
           ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  agttctttatatatatattggatattagccctctgttggatatagggttaatgaagatct 25

                                   
Query: 424 tttcctagtttgtaggctgccatt 447
           ||||||||||||||||||||||||
Sbjct: 24  tttcctagtttgtaggctgccatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no148_k17.g1 MSMg01no148_k17.g1 CHROMAT_FILE:
MSMg01no148_k17.g1 PHD_FILE: MSMg01no148_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:38 2005
         (537 letters)



>mm_chr3_49300046_49300982
          Length = 937

 Score = 1015 bits (525), Expect = 0.0
 Identities = 534/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacacacaaagcgaagcaaacttttaatacccattttgtatatgaaggtatgacaagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacacacaaagcgaagcaaacttttaatacccattttgtatatgaaggtatgacaagagg 260

                                                                       
Query: 61  agacaagcaagctgtgaagagacagagctacgtgaatacatatagatttcacatttacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacaagcaagctgtgaagagacagagctacgtgaatacatatagatttcacatttacag 320

                                                                       
Query: 121 tgtctgcctaactgacctatcacatccatgccacctacctgaccatgtcacaaagaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctgcctaactgacctatcacatccatgccacctacctgaccatgtcacaaagaagga 380

                                                                       
Query: 181 aatgaaagaataaccacagagactttaaaagctctaccacaaaacattatagtgatgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaaagaataaccacagagactttaaaagctctaccacaaaacattatagtgatgatt 440

                                                                       
Query: 241 ccaagaatattggatagatgcaaataaacataattgacattaaaattataagataaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagaatattggatagatgcaaataaacataattgacattaaaattataagataaggat 500

                                                                       
Query: 301 cagtgtttgtagtgtaatggtagagagtttacatgatgccatggccccaattccttgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 501 cagtgtttgtagtgtaatggtagagagtttacatgatgccatgggttcaattccttgaac 560

                                                                       
Query: 361 cagagtatatatatgtgtatgtcggtgagggaggggtttaagatggctgagtgattggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagtatatatatgtgtatgtcggtgagggaggggtttaagatggctgagtgattggga 620

                                                                       
Query: 421 gaacttccccttcttctagagaactttatcagcctactcaccaatatcagcctactcaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaacttccccttcttctagagaactttatcagcctactcaccaatatcagcctactcaca 680

                                                                    
Query: 481 acttgtatctgcagggcactcttctagctgatacaactctgtagacacatgcatggc 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttgtatctgcagggcactcttctagctgatacaactctgtagacacatgcatggc 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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