BAC Information

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BAC

Clone NameMSMg01-148N14
Chromosome3 (Build37)
Map Location 122,267,723 - 122,267,871
singlet/doubletsinglet
Overlap geneFnbp1l
Upstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
Downstream genePpia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148N14.T7 (MSMg01no148_n14.b1)MSMg01-148N14.TJ (MSMg01no148_n14.g1)
ACCAG351729AG351730
length717706
length of high quality
(start - end)
---149 (421 - 569)
definitionCHROMAT_FILE: MSMg01no148_n14.b1 PHD_FILE: MSMg01no148_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:53 2005CHROMAT_FILE: MSMg01no148_n14.g1 PHD_FILE: MSMg01no148_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTAAATTTGCGGCGCTAAACGACTCCTATATCCAGAAATCCGCGGAAT
TCATACTATATCCATCATACTCCGAGATTTTTATCAGCTGCTAGATTTCA
CATGAGAGCTTCTATTTCACTTAGCTTATGAGTTTGTTTAAATTATTTAT
TTCAACTTGATTTACCTTTGCTACAGCGTGTATATCACGAATTCATTTCC
TTTATGTTTTCCAACTTGATGGACTACAGATGGCTATGTTCTGTGCTTAT
GGTGCACTAAATGTCCTCAGTATCTGTTGACGGATCTCCCTATCTTCCTT
AACTTTGCTATTCTGAATCCTCTCTCTTTCTTTGGATTATCATGGCTAAC
GATCTGTCAATCTTATTGATATTGTTCACACAATTAACTTCATTCTACTG
ATTTTATTATTCCCCCACCCCGAGNTTTTGTTACTTCTGCCTCATCAACT
GTATTCCCCAATTGAATATTTTTTTCCGTCTAGTTACTTGGCGTGCTGGT
ACTTTCCGCATAACACGTCAGATCCTTTTGTATCTGTACGTACCTCCTTC
CTGTGTGCCACTCTGCTGTTTACTACATAAAACTATACATCCGCTTCTAC
TATTTGACTCCAATTTGCTAATCCATACATCCCATTCCCCGCCCCTTACC
CTTCACATTTTATTACAAGACTTTAACAATGTTCTACCTCTTTCTTTTTA
CCCCCCATTTTTATTTC
CTCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTGTGTAGGTCACCTATCCTTGAACATT
TAACCTTCCTGCCTCAGCCTCGGAGTGCTAGGGTACATGTGTCACCACAT
CCGAGTGTTATCTAATTCTGATTACTATTACTTTACCAAAGCTATTTATG
ATAGCTCACCAGTTAACAGTACTTGCGGCTCTTGTAGAGGACCTGGGTTG
GGTCTCTGTATCCACAACATTGACTTGTGGTTTAGTAACTCCTGTTCTGA
CACCCCTTTCTGCCCTCTACGTGCACTAGGCACACACATGTGCACATAAT
AACATGTAGGAAATTTTTTCATTCATAAAAAAAAATTTAAAAGCTATTTA
CAACTGAGATCCCCCCCCCACACATGCACACAAGTTTAATTTTCAATAAA
CACTTACCGCTAATTCAACCCACATTATTTAAATCTATCAACTTTGTTCT
CTGGTTTCATTTTCTCCTAATGGTTTCTGATGTGTACAAGTTTGAACTCG
TACCAGCTATCCCAGTCTATAGCTGTTTTCTTGGGGCTTCCCTTTCCTAT
AATCTTTGCACCTCTGCTATCTGGATACACTAGGCTCACTATCATTCTGC
AGGACCACATTCCCCTGTAGTTTTCCCGAACGTTTGCCCAATAATCCTTC
CTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_n14.g1 MSMg01no148_n14.g1 CHROMAT_FILE:
MSMg01no148_n14.g1 PHD_FILE: MSMg01no148_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:53 2005
         (149 letters)



>mm_chr3_122267523_122268071
          Length = 549

 Score =  257 bits (133), Expect = 2e-73
 Identities = 145/149 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatgcacacaagtttaattttcaataaacacttaccgctaattcaacccacattattt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cacatgcacacaagtttaattttcaataaacacttactgctaattcaacccacattattt 260

                                                                       
Query: 61  aaatctatcaactttgttctctggtttcattttctcctaatggtttctgatgtgtacaag 120
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 261 aaatctatcaactttgttctctgatttcattttctcctaatggtttctgatgtgtataag 320

                                        
Query: 121 tttgaactcgtaccagctatcccagtcta 149
           ||||||||| |||||||||||||||||||
Sbjct: 321 tttgaactcataccagctatcccagtcta 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)