Query= MSMg01no149_e06.b1 MSMg01no149_e06.b1 CHROMAT_FILE:
MSMg01no149_e06.b1 PHD_FILE: MSMg01no149_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:28 2005
(526 letters)
>mm_chr3_61550599_61551525
Length = 927
Score = 996 bits (515), Expect = 0.0
Identities = 524/527 (99%), Gaps = 1/527 (0%)
Strand = Plus / Minus
Query: 1 tggaatccccattcaaccac-atggctgtagttggcacatcacaattggttgaagatgga 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tggaatccccattcaaccacaatggctgtagttggcacatcacaattggttgaagatgga 481
Query: 60 ctgttataattggctaagagccagttcttaatcacatgagcttatgttatgcttcgttta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctgttataattggctaagagccagttcttaatcacatgagcttatgttatgcttcgttta 421
Query: 120 ctcattaaggtagcatgtagtttgtctgctacagaggccactttagtccagaaattaagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctcattaaggtagcatgtagtttgtctgctacagaggccactttagtccagaaattaagc 361
Query: 180 acctgagcttagaaatagtgttagagcaaacatttcaacttaacacacttggtcactatc 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acctgaacttagaaatagtgttagagcaaacatttcaacttaacacacttggtcactatc 301
Query: 240 tccaaggatgaggtggcaaaattttatcttacacaattaatggggactatactcattcac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tccaaggatgaggtggcaaaattttatcttacacaattaatggggactatactcattcac 241
Query: 300 agttttcttcatttgaaagttactgaaagtggtgttcctgctcttgctctctttcttgct 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agtttttttcatttgaaagttactgaaagtggtgttcctgctcttgctctctttcttgct 181
Query: 360 cttgctcccttctctcctcctgctcaacttctctctcttctcactcctgtccccctctct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cttgctcccttctctcctcctgctcaacttctctctcttctcactcctgtccccctctct 121
Query: 420 ctccatgtgcttatggccagactccactcctctacctcctctctctccctctccccctcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctccatgtgcttatggccagactccactcctctacctcctctctctccctctccccctcc 61
Query: 480 tccctcaactctccttcccatgtcctattttatactaaaaaaaaaaa 526
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tccctcaactctccttcccatgtcctattttatactaaaaaaaaaaa 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space: 473172
Effective search space used: 473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_e06.g1 MSMg01no149_e06.g1 CHROMAT_FILE:
MSMg01no149_e06.g1 PHD_FILE: MSMg01no149_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:28 2005
(504 letters)
>mm_chr3_61378483_61379387
Length = 905
Score = 938 bits (485), Expect = 0.0
Identities = 500/505 (99%), Gaps = 1/505 (0%)
Strand = Plus / Plus
Query: 1 ccactactttcagttgccaggttaaattatcctcagtgagtgaaggttctgcttgagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactactttcagttgccaggttaaattatcctcagtgagtgaaggttctgcttgagtta 260
Query: 61 tgttagtcttttaaggattgctatctgagttgcaaatttttttt-ggcttctattgtaac 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tgttagtcttttaaggattgctatctgagttgcaaatttttttttggcttctattgtaac 320
Query: 120 taaaggtatatgtgtttaagacagaagataaattggttgagaaaaactgtaagtgataca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaggtatatgtgtttaagacagaagataaattggttgagaaaaactgtaagtgataca 380
Query: 180 gggaatttgggccaggatttaagactgaagaaatccaagaggaaaactttagataaccat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaatttgggccaggatttaagactgaagaaatccaagaggaaaactttagataaccat 440
Query: 240 agtcaatgctacagagatggtcaattggataaaaatgtaaaataaattattaaacttaag 299
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 441 agtcaatgctacagagatggtcaattgtataaaaatgtaaaattaattattaaacttaag 500
Query: 300 acgtgatagcaaactgatgatctctgaactaataaacagagtagatggatgtgactacta 359
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgatagcacactgatgatctctgaactaataaacagagtagatggatgtgactacta 560
Query: 360 taggtcatgatgttacttatggaatatgtgtaacaaaaatattaacttaaaagggaccag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggtcatgatgttacttatggaatatgtgtaacaaaaatattaacttaaaagggaccag 620
Query: 420 aaaaaagagtaaagtcatcattaggataggaagagacttttgcatacttgttgaggaaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaagagtaaagtcatcattaggataggaagagacttttgcatacttgttgaggaaga 680
Query: 480 gaaagaaatcagtgaaggagacatt 504
|||||||||||||||||||||||||
Sbjct: 681 gaaagaaatcagtgaaggagacatt 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space: 442130
Effective search space used: 442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
