BAC Information

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BAC

Clone NameMSMg01-149E06
Chromosome3 (Build37)
Map Location 61,378,683 - 61,551,138
singlet/doubletdoublet
Overlap genenone
Upstream geneMbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149E06.T7 (MSMg01no149_e06.b1)MSMg01-149E06.TJ (MSMg01no149_e06.g1)
ACCAG352032AG352033
length690695
length of high quality
(start - end)
526 (70 - 595)504 (77 - 580)
definitionCHROMAT_FILE: MSMg01no149_e06.b1 PHD_FILE: MSMg01no149_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:28 2005CHROMAT_FILE: MSMg01no149_e06.g1 PHD_FILE: MSMg01no149_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,550,612 - 61,551,138)(61,378,683 - 61,379,187)
sequence
NATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGATTAATACGATGTGGAATCCCCATTCAACCACATGGCTGTAGT
TGGCACATCACAATTGGTTGAAGATGGACTGTTATAATTGGCTAAGAGCC
AGTTCTTAATCACATGAGCTTATGTTATGCTTCGTTTACTCATTAAGGTA
GCATGTAGTTTGTCTGCTACAGAGGCCACTTTAGTCCAGAAATTAAGCAC
CTGAGCTTAGAAATAGTGTTAGAGCAAACATTTCAACTTAACACACTTGG
TCACTATCTCCAAGGATGAGGTGGCAAAATTTTATCTTACACAATTAATG
GGGACTATACTCATTCACAGTTTTCTTCATTTGAAAGTTACTGAAAGTGG
TGTTCCTGCTCTTGCTCTCTTTCTTGCTCTTGCTCCCTTCTCTCCTCCTG
CTCAACTTCTCTCTCTTCTCACTCCTGTCCCCCTCTCTCTCCATGTGCTT
ATGGCCAGACTCCACTCCTCTACCTCCTCTCTCTCCCTCTCCCCCTCCTC
CCTCAACTCTCCTTCCCATGTCCTATTTTATACTAAAAAAAAAAAAGTGG
CATTCTTTATGCTCCAACAGGAAAACTGCTGAAAAGTTCCAAATACCTCT
ACCCAAAGAATGATAAATACATTAAATAGGGGTTTAAAAT
NNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACTACTTTCAGTTGCCAGGTTA
AATTATCCTCAGTGAGTGAAGGTTCTGCTTGAGTTATGTTAGTCTTTTAA
GGATTGCTATCTGAGTTGCAAATTTTTTTTGGCTTCTATTGTAACTAAAG
GTATATGTGTTTAAGACAGAAGATAAATTGGTTGAGAAAAACTGTAAGTG
ATACAGGGAATTTGGGCCAGGATTTAAGACTGAAGAAATCCAAGAGGAAA
ACTTTAGATAACCATAGTCAATGCTACAGAGATGGTCAATTGGATAAAAA
TGTAAAATAAATTATTAAACTTAAGACGTGATAGCAAACTGATGATCTCT
GAACTAATAAACAGAGTAGATGGATGTGACTACTATAGGTCATGATGTTA
CTTATGGAATATGTGTAACAAAAATATTAACTTAAAAGGGACCAGAAAAA
AGAGTAAAGTCATCATTAGGATAGGAAGAGACTTTTGCATACTTGTTGAG
GAAGAGAAAGAAATCAGTGAAGGAGACATTAATAATGGAGCAAGATCTAG
AAGAGACATTTGGAGCTAAAACTAGAATGTTTGAATGTAGTGAGTGCAGA
CTAGTGATAATATGCATAATGATGAAATATGGAGGAGGAAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_e06.b1 MSMg01no149_e06.b1 CHROMAT_FILE:
MSMg01no149_e06.b1 PHD_FILE: MSMg01no149_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:28 2005
         (526 letters)



>mm_chr3_61550599_61551525
          Length = 927

 Score =  996 bits (515), Expect = 0.0
 Identities = 524/527 (99%), Gaps = 1/527 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaatccccattcaaccac-atggctgtagttggcacatcacaattggttgaagatgga 59
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tggaatccccattcaaccacaatggctgtagttggcacatcacaattggttgaagatgga 481

                                                                       
Query: 60  ctgttataattggctaagagccagttcttaatcacatgagcttatgttatgcttcgttta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctgttataattggctaagagccagttcttaatcacatgagcttatgttatgcttcgttta 421

                                                                       
Query: 120 ctcattaaggtagcatgtagtttgtctgctacagaggccactttagtccagaaattaagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctcattaaggtagcatgtagtttgtctgctacagaggccactttagtccagaaattaagc 361

                                                                       
Query: 180 acctgagcttagaaatagtgttagagcaaacatttcaacttaacacacttggtcactatc 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acctgaacttagaaatagtgttagagcaaacatttcaacttaacacacttggtcactatc 301

                                                                       
Query: 240 tccaaggatgaggtggcaaaattttatcttacacaattaatggggactatactcattcac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tccaaggatgaggtggcaaaattttatcttacacaattaatggggactatactcattcac 241

                                                                       
Query: 300 agttttcttcatttgaaagttactgaaagtggtgttcctgctcttgctctctttcttgct 359
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agtttttttcatttgaaagttactgaaagtggtgttcctgctcttgctctctttcttgct 181

                                                                       
Query: 360 cttgctcccttctctcctcctgctcaacttctctctcttctcactcctgtccccctctct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cttgctcccttctctcctcctgctcaacttctctctcttctcactcctgtccccctctct 121

                                                                       
Query: 420 ctccatgtgcttatggccagactccactcctctacctcctctctctccctctccccctcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctccatgtgcttatggccagactccactcctctacctcctctctctccctctccccctcc 61

                                                          
Query: 480 tccctcaactctccttcccatgtcctattttatactaaaaaaaaaaa 526
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  tccctcaactctccttcccatgtcctattttatactaaaaaaaaaaa 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space:   473172
Effective search space used:   473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no149_e06.g1 MSMg01no149_e06.g1 CHROMAT_FILE:
MSMg01no149_e06.g1 PHD_FILE: MSMg01no149_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:28 2005
         (504 letters)



>mm_chr3_61378483_61379387
          Length = 905

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%), Gaps = 1/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactactttcagttgccaggttaaattatcctcagtgagtgaaggttctgcttgagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactactttcagttgccaggttaaattatcctcagtgagtgaaggttctgcttgagtta 260

                                                                       
Query: 61  tgttagtcttttaaggattgctatctgagttgcaaatttttttt-ggcttctattgtaac 119
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tgttagtcttttaaggattgctatctgagttgcaaatttttttttggcttctattgtaac 320

                                                                       
Query: 120 taaaggtatatgtgtttaagacagaagataaattggttgagaaaaactgtaagtgataca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaggtatatgtgtttaagacagaagataaattggttgagaaaaactgtaagtgataca 380

                                                                       
Query: 180 gggaatttgggccaggatttaagactgaagaaatccaagaggaaaactttagataaccat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaatttgggccaggatttaagactgaagaaatccaagaggaaaactttagataaccat 440

                                                                       
Query: 240 agtcaatgctacagagatggtcaattggataaaaatgtaaaataaattattaaacttaag 299
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 441 agtcaatgctacagagatggtcaattgtataaaaatgtaaaattaattattaaacttaag 500

                                                                       
Query: 300 acgtgatagcaaactgatgatctctgaactaataaacagagtagatggatgtgactacta 359
           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgatagcacactgatgatctctgaactaataaacagagtagatggatgtgactacta 560

                                                                       
Query: 360 taggtcatgatgttacttatggaatatgtgtaacaaaaatattaacttaaaagggaccag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggtcatgatgttacttatggaatatgtgtaacaaaaatattaacttaaaagggaccag 620

                                                                       
Query: 420 aaaaaagagtaaagtcatcattaggataggaagagacttttgcatacttgttgaggaaga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaagagtaaagtcatcattaggataggaagagacttttgcatacttgttgaggaaga 680

                                    
Query: 480 gaaagaaatcagtgaaggagacatt 504
           |||||||||||||||||||||||||
Sbjct: 681 gaaagaaatcagtgaaggagacatt 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space:   442130
Effective search space used:   442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)