Query= MSMg01no149_h01.b1 MSMg01no149_h01.b1 CHROMAT_FILE:
MSMg01no149_h01.b1 PHD_FILE: MSMg01no149_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:42 2005
(351 letters)
>mm_chr3_105628059_105628809
Length = 751
Score = 621 bits (321), Expect = 0.0
Identities = 338/347 (97%), Gaps = 6/347 (1%)
Strand = Plus / Minus
Query: 5 ggaattctctaagttgctacaaggctgctaagccaaaatggtatctctccaggccagccc 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 367 ggaattctctaagttgctacaaggctgctaagccaaaatggtatttctccaggccagccc 308
Query: 65 atttttagatttatgatatctcagtatcaagatttaggaccaaatttaatttaattttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atttttagatttatgatatctcagtatcaagatttaggaccaaatttaatttaattttct 248
Query: 125 tttgtattgttttgtttgctgcgctttaaaaaatgataatctcctctctccttctctctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttgtattgttttgtttgctgcgctttaaaaaatgataatctcctctctccttctctctt 188
Query: 185 tctctttctcactccccctctccctcttcctcactttcctcttcctttctctcccctcct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tctctttctcactccccctctccctcttcctcactttcctcttcctttctctcccctcc- 129
Query: 245 ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgttactgtatgtat 304
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 128 -----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgttactgcatgtat 74
Query: 305 gtgaaggtcagaggaaaacttctgtaaggtgtgcctctccttctccc 351
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 73 gtgaaggtcagaggaaaacttctgtaaggtgggcctctccttctccc 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space: 253764
Effective search space used: 253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_h01.g1 MSMg01no149_h01.g1 CHROMAT_FILE:
MSMg01no149_h01.g1 PHD_FILE: MSMg01no149_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:42 2005
(468 letters)
>mm_chr3_105475882_105476748
Length = 867
Score = 890 bits (460), Expect = 0.0
Identities = 466/468 (99%), Gaps = 1/468 (0%)
Strand = Plus / Plus
Query: 1 tagtgattcaggctccctcacttcagatactaggtaactaagtaaggcagaaggatccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtgattcaggctccctcacttcagatactaggtaactaagtaaggcagaaggatccca 260
Query: 61 atactgttcatttgaagtaatagtttccctttcatgctagctagcatggtaaccaccata 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atactgttcatttgaagtaatagtttccctttcatgctagctggcatggtaaccaccata 320
Query: 121 agaggaacaggaaaaacttttatttttcctctgatttcctaatgaattctcattacttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggaacaggaaaaacttttatttttcctctgatttcctaatgaattctcattacttgc 380
Query: 181 aaagctttaaaatgatgggaaaaaggaaaagtattgtcatgacccatgacacttagagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagctttaaaatgatgggaaaaaggaaaagtattgtcatgacccatgacacttagagcc 440
Query: 241 caaacagcatcatgaaaagcattagaatcgagggacagtggctttgaaaaatgaaacggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaacagcatcatgaaaagcattagaatcgagggacagtggctttgaaaaatgaaacggc 500
Query: 301 tttttaaaggggttccttgtgggtcttgttttttattcaggatattctacgttttctcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttaaaggggttccttgtgggtcttgttttttattcaggatattctacgttttctcat 560
Query: 361 caactgttggaatgacttttatctcagcaggttatttaaactatgctggctgatgacacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caactgttggaatgacttttatctcagcaggttatttaaactatgctggctgatgacacg 620
Query: 421 ttagccagtgcagggcacagaccccaagtcctaggggactccttggac 468
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 ttagccagtgcagggcacagaccc-aagtcctaggggactccttggac 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
