BAC Information

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BAC

Clone NameMSMg01-149I06
Chromosome3 (Build37)
Map Location 100,653,904 - 100,654,452
singlet/doubletsinglet
Overlap geneVtcn1
Upstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2
Downstream geneTrim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149I06.T7 (MSMg01no149_i06.b1)MSMg01-149I06.TJ (MSMg01no149_i06.g1)
ACCAG352213AG352214
length697699
length of high quality
(start - end)
555 (48 - 602)491 (74 - 564)
definitionCHROMAT_FILE: MSMg01no149_i06.b1 PHD_FILE: MSMg01no149_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:49 2005CHROMAT_FILE: MSMg01no149_i06.g1 PHD_FILE: MSMg01no149_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTGCTTTCCACAGTGGTCCCCAGTTCAAGGCACCAATTTTCC
CAAAAAAATATTGAAAAGAGTAGGGCTTTGAGATGTAAGCCATTAAGAGA
AGGCACAGTCTGGACTCAGTCCTGGCTTGATTTCTGGGCTACATTGTTGG
CTTGAAGGAACAAGAGGCTGAGGCAGCTGATGTGAGAATCAGCTTGGTAA
ATGGGAAACTCAGGGCTGGACAGCCTGAGCCCTCGGTGTGTAGGGTGGAC
AGACAGTGGGACAGCTCCAGGACCCTAGGCGGCAGCAATGTCAACTGACA
CCTTCCCTTCAGGTCCCTGCTCCGTGCCTCCTTCTCTTCCAGCTCATTGT
TATTCAGAAGCAACTTCTTCTCGGGCCTTCTCAGCATCTCCCTTGCTAGT
TTATAATGCTACATTTTATGTTGGGATTGGAGGCTAAGACTATGAAATGG
ACTATTTATTTTAAATCGTGCGTAGGAAGTAGAGATTGGGTAGAGAACAG
TGTGGGAAACGAGTCGAGAGATGTCACGCTCAGGGCCTCTCCTCATCACA
GATGTCCCTTCTACGTTCACCAATGCACACGGAAGTCGAGAGCAGCATAA
TGTGGCATGTCTGAGCTATCCAGACCCCCAATGGGCCCTGTTTTAAT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATATTATGAATACACATGCATTTAA
ATATATTTATATATTTGCTTTGAGACAGAATCTCACTAATTAGCACTGGC
TGACCAGGAACCCACTATGTAGATCAGGCTAGCCTTGAGCTTATACAGAT
CAGCCTGCTTCAGCTTCCTGAGTGCTGGATTCAAGGTATGTGTCACCACA
TCCCATTTATATATATGACCTTAAAGTATTATTGTAATCAGAATAAATTG
AAGAAGAAATAACTTTGTAATGACTTTAATAGTCCCATCCAAGAACATGG
TATACCTTCTCATTTGTCTGTAGTCATTTATATTTTTTTAACAAAGTTTT
AAGCTTTTCTCTATGAATTCTTCTCTCCTCAGGTTAACTGTTAGATAACT
CATTTCTTTATTGCTATCGTAAATACTATCTTGATTTACATTTCTTTTTC
AGCCGCTTTTTGCTGACATAAAAAGGAGTTTTATAAAGTAGCCAGTATTT
TAAATGTTTCTGAAATAGCTTCGATATACTAGCTATTATTCATTCCCTGA
AAGTTTGGTAAAATGTACTTGTGGTGGTTTGAATATGCTTGGCCCAGGGA
GTGGCACTATTAAGAGGTATAGCTTTGTTGGAGTAGGTGAGGCCTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_i06.b1 MSMg01no149_i06.b1 CHROMAT_FILE:
MSMg01no149_i06.b1 PHD_FILE: MSMg01no149_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:49 2005
         (555 letters)



>mm_chr3_100653701_100654652
          Length = 952

 Score =  982 bits (508), Expect = 0.0
 Identities = 540/552 (97%), Gaps = 3/552 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgctttccacagtggtccccagttcaaggcaccaattttcccaaaaaaata 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggaattcactgctttggacagtggtccccagttcaaggcaccaattttcccaaaaaaata 693

                                                                       
Query: 64  ttgaaaagagtagggctttgagatgtaagccattaagagaaggcacagtctggactcagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttgaaaagagtagggctttgagatgtaagccattaagagaaggcacagtctggactcagt 633

                                                                       
Query: 124 cctggcttgatttctgggctacattgttggcttgaaggaacaagaggctgaggcagctga 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 632 cctggcttgatttctgggctacattgttggcttgaagggacaagaggctgaggcagctga 573

                                                                       
Query: 184 tgtgagaatcagcttggtaaatgggaaactcagggctggacagcctgagccctcggtgtg 243
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 572 tgtgagaatcagcttggtaaatgggaaactcagggctgcacagcccgagccctcggtgtg 513

                                                                       
Query: 244 tagggtggacagacagtgggacagctccaggaccctaggcggcagcaatgtcaactgaca 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 512 tagggtggacagacagtgggacagctccaggacccaaggcggcagcaatgtcaactgaca 453

                                                                       
Query: 304 ccttcccttcaggtccctgctccgtgcctccttctcttccagctcattgttattcagaag 363
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccttcccttcaggtccctgctccctgcctccttctcttccagctcattgttattcagaag 393

                                                                       
Query: 364 caacttcttctcgggccttctcagcatctcccttgctagtttataatgctacattttatg 423
           |||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caa---cttctcaggccttctcagcatctcccttgctagtttataatgctacattttatg 336

                                                                       
Query: 424 ttgggattggaggctaagactatgaaatggactatttattttaaatcgtgcgtaggaagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttgggattggaggctaagactatgaaatggactatttattttaaatcgtgcgtaggaagt 276

                                                                       
Query: 484 agagattgggtagagaacagtgtgggaaacgagtcgagagatgtcacgctcagggcctct 543
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 275 agagattgggtagagaacagtgtgggaaacgagtcgagagatgtcatgctcagggcctct 216

                       
Query: 544 cctcatcacaga 555
           ||||||||||||
Sbjct: 215 cctcatcacaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 952
Length adjustment: 10
Effective length of query: 545
Effective length of database: 942
Effective search space:   513390
Effective search space used:   513390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)