BAC Information

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BAC

Clone NameMSMg01-149M02
Chromosome3 (Build37)
Map Location 108,139,845 - 108,140,261
singlet/doubletsinglet
Overlap geneSort1
Upstream geneLOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5
Downstream geneMybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149M02.T7 (MSMg01no149_m02.b1)MSMg01-149M02.TJ (MSMg01no149_m02.g1)
ACCAG352389AG352390
length693701
length of high quality
(start - end)
522 (49 - 570)---
definitionCHROMAT_FILE: MSMg01no149_m02.b1 PHD_FILE: MSMg01no149_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:08 2005CHROMAT_FILE: MSMg01no149_m02.g1 PHD_FILE: MSMg01no149_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCC
GCGGAATTCTCACCATACCCATAATGAAGGAGGCTAGAATAAGATCAAAG
AGTCCAAAACTCCTATAATTTTGTGAGAATCTGGCTGGCAAAGGGGTCTG
CTAAGAAGGCTATTAAATCCTAGTCTCTGCTAATTAAATCAGCTGCTAGA
GACCAGCAGGCACAGCTCAGTGGTCACGGCTGTATCTGGTTCTCCATCCC
CAGTTCCCTCTTTAACCCCACTACTTCAATGAAAGCGATCATATTGATCG
ATCCATCCCTCCAGCCCATTGGGTAATTCTCAGAGTTCACTGTAAGTCAA
CATCTCACTTGAGTTTGCCAAACTGGCCACCACTGACTCCGGAAACACTG
TCTTCACCTGGCTTTTGCAGCAGCACGGTGTCCTGATGTCCCCTATCTCA
CCCCTTCCTTCCACCTAGGCTTCTCAGCTAGATTCTTCTTTTCTTTGCAA
CCTTCAGTGGAGAGGTGCTTCAGGGCTTGCTCAATTTCTCCCATCTCTTC
TCTACCTCCTCATTCTTCAGAAGAACACACCCAGTCACATGGCTTTAAAT
ACCATGTAATTTGGGAAGATTCATAAATATGAATGCCAATTTGACATTTC
ATCTCCGATATATAGCAAGCCATTTCTTAGCCAACACGGTGAA
CAAACAATGAAAGGGGACCCCGGGNGNCGCNTTATCCCACCCGCANGNGA
NNNNNNGNNGTTTCGNGACCCGCGGGNGNGNGNGAGANNNGAANAANNNG
NNAACNNCAACCAGCGCCCCAGAGAACANCGCGAAGGAAAAGAGGGGACA
AGGGGACGGGACCAGCGCCAGAGCAAACACAGCCAGAGCCAACAGGCAAA
CCACAGCCGGAACACAAGGCGCCCCGAANACAGGAACCAACCCGGACCTT
TTTCACACCGGGCCCCCGACGCGGCACCCAGGACAACAGCACAGCACGAC
ACAGGACCAAAATTTTTTTTTTTTTGACCCAGAGAGAGAGAGAGAGCAGA
CACCACTGCCCCCCCCCCCAACAGAGAGAAAGCACAAGACCGGGCCCAGC
AAAGGGAGAGCACGCCGAACGAAAAGGAAGACACCCCCACCGAGGCAGAA
GAGCAACACAACCNCAAAAAACGCAAACACCAAAACCCCCCACCCCCCCA
CCAAGAAACAAAGCCCCCCAGAACAAAAAAAGCCCCGCACCCACGGGAGC
CAGGACAGCCAACAACGCCCGGGCCACAAAGCCGGAAACGACCCCCAAAG
AACCCGGACACGAGACACCCCACAAAAAACCCAAACGGCCAAAAACGGCA
CGAACGGACGACGCGGAGCCCCCTTTTTCTCCTTTTCCACGCCCCCCGGC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_m02.b1 MSMg01no149_m02.b1 CHROMAT_FILE:
MSMg01no149_m02.b1 PHD_FILE: MSMg01no149_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:08 2005
         (522 letters)



>mm_chr3_108139845_108140766
          Length = 922

 Score =  799 bits (413), Expect = 0.0
 Identities = 416/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctcaccatacccataatgaaggaggctagaataagatcaaagagtccaaaactc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggaattctcaccatagccataatgaaggaggctagaataagatcaaagagtccaaaactc 358

                                                                       
Query: 65  ctataattttgtgagaatctggctggcaaaggggtctgctaagaaggctattaaatccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctataattttgtgagaatctggctggcaaaggggtctgctaagaaggctattaaatccta 298

                                                                       
Query: 125 gtctctgctaattaaatcagctgctagagaccagcaggcacagctcagtggtcacggctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtctctgctaattaaatcagctgctagagaccagcaggcacagctcagtggtcacggctg 238

                                                                       
Query: 185 tatctggttctccatccccagttccctctttaaccccactacttcaatgaaagcgatcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tatctggttctccatccccagttccctctttaaccccactacttcaatgaaagcgatcat 178

                                                                       
Query: 245 attgatcgatccatccctccagcccattgggtaattctcagagttcactgtaagtcaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 attgatcgatccatccctccagcccattgggtaattctcagagttcactgtaagtcaaca 118

                                                                       
Query: 305 tctcacttgagtttgccaaactggccaccactgactccggaaacactgtcttcacctggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tctcacttgagtttgccaaactggccaccactgactccggaaacactgtcttcacctggc 58

                                                                    
Query: 365 ttttgcagcagcacggtgtcctgatgtcccctatctcaccccttccttccacctagg 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ttttgcagcagcacggtgtcctgatgtcccctatctcaccccttccttccacctagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)