Query= MSMg01no149_m17.b1 MSMg01no149_m17.b1 CHROMAT_FILE:
MSMg01no149_m17.b1 PHD_FILE: MSMg01no149_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:11 2005
(580 letters)
>mm_chr3_152702193_152703171
Length = 979
Score = 1002 bits (518), Expect = 0.0
Identities = 561/582 (96%), Gaps = 15/582 (2%)
Strand = Plus / Minus
Query: 1 tagatgtgtgaataagaaacctgacatttcatttctgcgcaatccatctgcagaacctga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 769 tagatgtgtgaataagaaacctgacatttcatttctgcacaatccatctgcagaacctga 710
Query: 61 atctgacatgaacacttgctccatgaaagaacaagttaaacactgcatttcacaacaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 atctgacatgaacacttgctccatgaaagaacaagttaaacactgcatttcacaacaggt 650
Query: 121 gcctgtgaacgcacctcgtactggttctgaaaaaaaaaatctgaaagaaaaataaaatag 180
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 649 ----------gcacctcgtactggttctg--aaaaaaaatctgaaagaaaaataaaatag 602
Query: 181 atgcttaactgcttcattttaattttgtttcctgaagccatatattatctagctaggtga 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 atgcttaactgcttcattttaattttgtttcctgaagccatatattatctggctaggtga 542
Query: 241 ttgatgatatcatttaaattcaattctc-aaaaaaaaattagaccattagatagcaaata 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 541 ttgatgatatcatttaaattcaattctcaaaaaaaaaattagaccattagatagcaaata 482
Query: 300 aaattgtcattttttccattcacaaaaagacaaggtagaagatgaatacattagtagtct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaattgtcattttttccattcacaaaaagacaaggtagaagatgaatacattagtagtct 422
Query: 360 agctcttacttc-agggatcttgcattaagtgtttatgaagcaacactcaacattgtagg 418
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agctctcac-tctagggatcttgcattaagtgtttatgaagcaacactcaacattgtagg 363
Query: 419 gtcaatactgggatcagcattgcatggtccgggtgacctcaaggcagattgtttaatttg 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 362 gtcaatactgggatcagcattgcatggtccgggttacctcaaggcagattgtttaatttg 303
Query: 479 tttcagtctcgttttattcacctgtaaagtgggggcagccccctcagagaataaagtctc 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttcagtctcgttttcttcacctgtaaagtgggggcagccccctcagagaataaagtctc 243
Query: 539 cccaaacctcaagggtctgtcttaaatattagcttaagataa 580
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 242 cccagacctcaagggtctgtcttaaatattagcttaagataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_m17.g1 MSMg01no149_m17.g1 CHROMAT_FILE:
MSMg01no149_m17.g1 PHD_FILE: MSMg01no149_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:11 2005
(590 letters)
>mm_chr3_152544663_152545655
Length = 993
Score = 992 bits (513), Expect = 0.0
Identities = 572/593 (96%), Gaps = 3/593 (0%)
Strand = Plus / Plus
Query: 1 agccacctggcctcgctcctgccagtcaccccagggacatgcttccaagcatatgtaaag 60
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agccacctggcctcgttcctgccagtaaccccagggacatgcttccaagcatatgtaaag 260
Query: 61 catggttaaaaccatataacaatagttataagtccttacgttaagggattggatggaaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 catggttaaaaccatataacaatagttataagtccttacgttaagggagtggatggaaaa 320
Query: 121 ctgttccctttgctctttcttccacataacctgattattattgtaactgcacacgtaaaa 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 321 ctgttccctttgctctttcttccacataacctgattattattgtagctgcacacataaaa 380
Query: 181 ccttctaatcacaaaacacgtgtgaagttcacatgttcacatgctcagaacactcagaag 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttctaatcacaaaacacatgtgaagttcacatgttcacatgctcagaacactcagaag 440
Query: 241 gcatcatatgttagatgttttgggggcagggacatggctccttaacgtttgccactgaaa 300
|||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gcatcagatggcagatgttttgggggcagggacatggctccttaatgtttgccactgaaa 500
Query: 301 gctttatgcgatggctgggacagagtgggcaccttaacacacactgttgattgagagagg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 gctttatgcgatggctgggacagaatgggcaccttaacacacactgttgattgagagagg 560
Query: 361 aaatggaatttctacctcatgtgatcccacagttcacatacagtgccacagaggagccct 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatggaatgtctacctcatgtgatcccacagttcacatacagtgccacagaggagccct 620
Query: 421 taaagcagaagccacctaaattggagaactgcaactggtctagactggggttaccc---a 477
|||||| | |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 621 caaagcatatgccacctaaattggagaactgcaactggtctagactggagttaccccaca 680
Query: 478 tgcagaggttcaagacttggccctgactgttagctatgtaaccttgaaccctcatctgtt 537
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 681 tgcagaggttcaagacttggccctgaatattagctatgtaaccttgaaccctcatctgtt 740
Query: 538 aggattcaagcccccatttctctgtaatgctgggtcggggacagctataaaat 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggattcaagcccccatttctctgtaatgctgggtcggggacagctataaaat 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 993
Length adjustment: 10
Effective length of query: 580
Effective length of database: 983
Effective search space: 570140
Effective search space used: 570140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
