Query= MSMg01no149_n13.b1 MSMg01no149_n13.b1 CHROMAT_FILE:
MSMg01no149_n13.b1 PHD_FILE: MSMg01no149_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:15 2005
(475 letters)
>mm_chr3_21929438_21930312
Length = 875
Score = 789 bits (408), Expect = 0.0
Identities = 454/472 (96%), Gaps = 8/472 (1%)
Strand = Plus / Minus
Query: 7 gaattcacaatactctctttcttcaccctcaagttttcttaacagtgtttctgcttgaag 66
||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 658 gaattcacagta--ctctttcttcaccctctagttttcttaacagtgtttcttcttgaag 601
Query: 67 agcagtagttttgttttgctttgttttgttcttaaagattagaactttttaaagagtaga 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 600 agcagtagttttgttttgctttgttttgttcttaaagattagaactttttaaagagta-a 542
Query: 127 aaaaaattaattttggtggaatacatttataattttttctttcataattcatgatttaaa 186
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaaagttaattttggtggaatacatttataattttttctttcataattcatgatttaaa 482
Query: 187 tgtttgatatcatttttttcaaggttctttttccttagtttagagacatagttatacagt 246
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 481 tgtttgatatcatttttttcaaggttctttttcctcagtttagagacatagttatacagt 422
Query: 247 tagtatcaagaaaattatccttgaagggcttagggtagagccttgtgtcagag---cact 303
||||||||||||||||| |||||||||||||||||||||||| |||||| || | ||
Sbjct: 421 tagtatcaagaaaattacccttgaagggcttagggtagagccctgtgtc--agtctctct 364
Query: 304 tacctctcctgtgcacaacctggagtccaattcctagcactgtaattgtaaagggggcac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tacctctcctgtgcacaacctggagtccaattcctagcactgtaattgtaaagggggcac 304
Query: 364 ctctgggtcagcacagaacacatccagacaccaagttctcagcacaaatgagatttattc 423
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 303 ctctgggtcagtacagaacacatccagacaccaagttctcagcacaaaggagatttattc 244
Query: 424 ccctagatgggtgaacagaggtgggctaggggatggggtctggggtgggtgg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ccctagatgggtgaacagaggtgggctaggggatggggtctggggtgggtgg 192
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_n13.g1 MSMg01no149_n13.g1 CHROMAT_FILE:
MSMg01no149_n13.g1 PHD_FILE: MSMg01no149_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:15 2005
(502 letters)
>mm_chr3_21819541_21820442
Length = 902
Score = 951 bits (492), Expect = 0.0
Identities = 502/510 (98%), Gaps = 8/510 (1%)
Strand = Plus / Plus
Query: 1 ctactgtgttctacactctgagaaaatacagattccaaaatcccagacaattacagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactgtgttctacactctgagaaaatacagattccaaaatcccagacaattacagagaa 260
Query: 61 gactgactcagttcaataaacatttgctgaaaactagccttgcgagaggtacggtgatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgactcagttcaataaacatttgctgaaaactagccttgcgagaggtacggtgatcg 320
Query: 121 gctccagggataagggagagggagtaagcttgaaaacaaacaataagctttataattaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctccagggataagggagagggagtaagcttgaaaacaaacaataagctttataattaag 380
Query: 181 tgctaaattgtgtgttgcagaatcaagaagcctggaagagagataaccaaaggagacagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctaaattgtgtgttgcagaatcaagaagcctggaagagagataaccaaaggagacagt 440
Query: 241 ggagcagctgagatttatagatgaagagagaattgatctaggctttgaaggatggaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcagctgagatttatagatgaagagagaattgatctaggctttgaaggatggaaagg 500
Query: 301 acttcaataggcaagtgtggaacagagctggagaaaacgaagccctgagtcttgtatatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttcaataggcaagtgtggaacagagctggagaaaacgaagccctgagtcttgtatatg 560
Query: 361 ccaggaaatgacaaagccagcccactagagatgttcttcattgaggaagtgagggcagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggaaatgacaaagccagcccactagagatgttcttcattgaggaagtgagggcagga 620
Query: 421 ttcccttaaagcggggtttccaaagtatacagacagagagaaggttgact--------gt 472
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ttcccttaaagcggggtttccaaagtatacagacagagagaaggttgactactggtctgt 680
Query: 473 tattcctcactagaactaaaaacaacaggc 502
||||||||||||||||||||||||||||||
Sbjct: 681 tattcctcactagaactaaaaacaacaggc 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
