Query= MSMg01no149_o24.b1 MSMg01no149_o24.b1 CHROMAT_FILE:
MSMg01no149_o24.b1 PHD_FILE: MSMg01no149_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:22 2005
(628 letters)
>mm_chr3_88516574_88517601
Length = 1028
Score = 1141 bits (590), Expect = 0.0
Identities = 617/627 (98%), Gaps = 5/627 (0%)
Strand = Plus / Minus
Query: 5 gaattcactcctgatgcga-gtcctccgacagctac-cacattgtggaacaaaagtgtat 62
|||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||
Sbjct: 960 gaattcactcctgaagggatgtcctccgacagctacacacattgtggaacaaaagtgtat 901
Query: 63 tcattaatctctttaa-atttatttttctctggccgggtgtggcggcgcacgcctttaat 121
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tcattaatctctttaagatttatttttctctggccgggtgtggcggcgcacgcctttaat 841
Query: 122 cccagcactcaggaggcagaggcaggtggatttctgagttcgaggttggccgtggtctac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 cccagcactcaggaggcagaggcaggtggatttctgagttcgaggttggccgtggtctac 781
Query: 182 agagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaaaaaaaaa 241
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 780 agagtgagttccaggacagccagggctatacagagaaaccctgtctc--aaaaaaaaaaa 723
Query: 242 aatttatttttctctggatgtatttgtaactatatgtattgcatggcccccttggaggct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aatttatttttctctggatgtatttgtaactatatgtattgcatggcccccttggaggct 663
Query: 302 agaagagcatacagtgagaccctatctcaaaaacaaaacaaagtaaaccactgaagggga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agaagagcatacagtgagaccctatctcaaaaacaaaacaaagtaaaccactgaagggga 603
Query: 362 aaaataaaaaatagaaaacatgtaacttaataataattataaatccttttatattaagga 421
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 602 aaaataaaaaatagaaaacatgtaacttaataataattgtaaatccttttatattaagga 543
Query: 422 tatatttttcagagttatcagctcaaggagcatatgcaaatgctggagcctgttatgttc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tatatttttcagagttatcagctcaaggagcatatgcaaatgctggagcctgttatgttc 483
Query: 482 ttgttgggcagggtttatgcaatgaatacaaaagcatattaagggggtggagagatgact 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttgttgggcagggtttatgcaatgaatacaaaagcatattaagggggtggagagatgact 423
Query: 542 canagggaaaagcactacgtcagaggatccagcttcaattcccatttgccacacagcaac 601
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 422 caaagggaaaagcactacgtcagaggatccagcttcaattcccatttgccacacaacaac 363
Query: 602 tcatatctacatacattactccagctc 628
|||||||||||||||||||||||||||
Sbjct: 362 tcatatctacatacattactccagctc 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_o24.g1 MSMg01no149_o24.g1 CHROMAT_FILE:
MSMg01no149_o24.g1 PHD_FILE: MSMg01no149_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:22 2005
(598 letters)
>mm_chr3_88353218_88354215
Length = 998
Score = 1127 bits (583), Expect = 0.0
Identities = 595/599 (99%), Gaps = 1/599 (0%)
Strand = Plus / Plus
Query: 1 ccaggacagcca-ggttatacagagaaatcctgtctcgcaaaaaccaaaaaacaaattgt 59
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 200 ccaggacagccagggttatacagagaaatcctgtctcacaaaaaccaaaaaacaaattgt 259
Query: 60 ttaaagaaaagcaattctgggaggatgggaagggagctttttgcaatgtaaatagaataa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttaaagaaaagcaattctgggaggatgggaagggagctttttgcaatgtaaatagaataa 319
Query: 120 acatataaattaatggaaaaaaaaagcaattaggagtatgatgagacacagcactggaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acatataaattaatggaaaaaaaaagcaattaggagtatgatgagacacagcactggaga 379
Query: 180 agccaagggcactgggcagccctgccaagaaccactgagagatttggtgatggggaatga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agccaagggcactgggcagccctgccaagaaccactgagagatttggtgatggggaatga 439
Query: 240 gagagcccacctttgcaggagaggggaatcctcccgaggaaaccactccacactttcctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagagcccacctttgcaggagaggggaatcctcccgaggaaaccactccacactttcctc 499
Query: 300 ccaagaaagcaggtgagacacaggtaagagttgaaattttattcagaaaaaagcaacccc 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 ccaagaaagcaggtgagacacaggtaagagttgaaaatttattcagaaaaaagcaacccc 559
Query: 360 cccttcctgtacctcgcccgatatggcgtttctagggccccgcccctccctccagatcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccttcctgtacctcgcccgatatggcgtttctagggccccgcccctccctccagatcat 619
Query: 420 catcccttttctactccagcctccatcacgctgttatgatgctgctacttgggtgagggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catcccttttctactccagcctccatcacgctgttatgatgctgctacttgggtgagggg 679
Query: 480 ttcctccaggtactgcaccagggcctgggcctgcaaggaggcaggagcacagtcagtcca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcctccaggtactgcaccagggcctgggcctgcaaggaggcaggagcacagtcagtcca 739
Query: 540 tgcatcgcttatgcttagacggatcccagaaccacgctggctccccacgccacacttag 598
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 740 tgcatcgcttatgcttagacggatccctgaaccacgctggctccccacgccacacttag 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
