Query= MSMg01no150_f20.b1 MSMg01no150_f20.b1 CHROMAT_FILE:
MSMg01no150_f20.b1 PHD_FILE: MSMg01no150_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:54 2005
(628 letters)
>mm_chr3_114547723_114548750
Length = 1028
Score = 1158 bits (599), Expect = 0.0
Identities = 616/623 (98%), Gaps = 4/623 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagacat--tccaaagaataattaacattcttgaattaattgcagtgtgccatt 62
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagacataat--aaagaataattaacattcttgaattaattgcagtgtgccatt 262
Query: 63 atagaaatgcagataaaatgatagaggacggcaggagggggtctctttccaactaagaag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atagaaatgcagataaaatgatagaggacggcaggagggggtctctttccaactaagaag 322
Query: 123 aggatggcagcaatactcaaagataatgagttgatatccggtgactgaaagtgaattaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggatggcagcaatactcaaagataatgagttgatatccggtgactgaaagtgaattaag 382
Query: 183 taattaagtaaaatataaagtaaggtcttggcagtgtaaaatccttctttaatgactcac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taattaagtaaaatataaagtaaggtcttggcagtgtaaaatccttctttaatgactcac 442
Query: 243 tcgagattctgggaggaaaaaaaatcacagtaaagaccactatacatttccttactgaaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcgagattctgggaggaaaaaaaatcacagtaaagaccactatacatttccttactgaaa 502
Query: 303 ggaagtccaaatgaacatctctaaagtgagtccagacaacatgaaatagcttttacgtta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggaagtccaaatgaacatctctaaagtgagtccagacaacatgaaatagcttttacgtta 562
Query: 363 tgatccagaacccccactagattgtcgtttattattctatcttctaattgaaccttatgt 422
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgatccagaatcttcactagattgtcgtttattattctatcttctaattgaaccttatgt 622
Query: 423 agtatttggtgtgaataggattctacacttgtgctagaagtttattcattaacataataa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtatttggtgtgaataggattctacacttgtgctagaagtttattcattaacataataa 682
Query: 483 ctattggttggtttctttaaaaaagtacaaactatcaatttttgtcatgtctttcttaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctattggttggtttctttaaaaaagtacaaactatcaatttttgtcatgtctttcttaaa 742
Query: 543 agtatagcagacagctatgttatgacatataccctttagaaattttagctttattttaca 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agtatagcagacagctatgttatgacatataccctttagaaattttagctttattttaca 802
Query: 603 aaaaaaagtgtatgtgtgtgtgc 625
|||||||||||||||||||||||
Sbjct: 803 aaaaaaagtgtatgtgtgtgtgc 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_f20.g1 MSMg01no150_f20.g1 CHROMAT_FILE:
MSMg01no150_f20.g1 PHD_FILE: MSMg01no150_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:54 2005
(478 letters)
>mm_chr3_114678603_114679480
Length = 878
Score = 816 bits (422), Expect = 0.0
Identities = 464/482 (96%), Gaps = 8/482 (1%)
Strand = Plus / Minus
Query: 1 ttgagtttcattccttattaaagtgggaggtgtagttatgatgatcatttctgatgtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgagtttcattccttattaaagtgggaggtgtagttatgatgatcatttctgatgtctt 619
Query: 61 catgagtaaacagtggaaataatcatatgaatgtgattatgaacgtatttgtttatgtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 catgagtaaacagtggaaataatcatatgaatgtgattatgaacgtatttgtttatgtaa 559
Query: 121 cacaaagaagacaatagtacttgaaataataaagtacataaaatactagcatgtgaacct 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gacaaagaagacaacagtacttgaaataataaagtacataaaatactagcatgtgaacct 499
Query: 181 ttctaagatgtgacttcagaacgtgtttgtcttcctaaagtatctctgggaggattaact 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 ttctaatatgtgacttcagaacgtgtttgtcttcctaaagtatctctgggaggattcact 439
Query: 241 ttgatgtttgcattgtatttctaaacgcagtaccagcaataaaggaacgggaaaaaaata 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgatggaggcattgtatttctaaacgcagtaccagcaataaaggaacgggaaaaaaata 379
Query: 301 aatcagccagttttgcccacagaaaggaaaaactcagtattgcccacccc----taagca 356
||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 378 aatcagccagttttgcccacagaaaggaaaaactcagtattgctga----gggttaagca 323
Query: 357 acaccagggattaactttgcttgatatcccttttaaaaattattcttatttccaaaaaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acaccagggattaactttgcttgatatcccttttaaaaattattcttatttccaaaaaaa 263
Query: 417 gagtaagcattctttttccagatagccacctttacgtctcataaaaatagaatggtgatg 476
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagtaagtattctttttccagatagccacctttacgtctcataaaaatagaatggtgatg 203
Query: 477 tt 478
||
Sbjct: 202 tt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
