BAC Information

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BAC

Clone NameMSMg01-150K16
Chromosome3 (Build37)
Map Location 39,974,254 - 40,059,762
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150K16.T7 (MSMg01no150_k16.b1)MSMg01-150K16.TJ (MSMg01no150_k16.g1)
ACCAG353039AG353040
length796720
length of high quality
(start - end)
156 (84 - 239)341 (80 - 420)
definitionCHROMAT_FILE: MSMg01no150_k16.b1 PHD_FILE: MSMg01no150_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:17 2005CHROMAT_FILE: MSMg01no150_k16.g1 PHD_FILE: MSMg01no150_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,974,254 - 39,974,393)(40,059,422 - 40,059,762)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGACGCGATCCGCGG
AATTCTACTACTATGACACACGAATCAGGCAATGCTGTAAAGACTTACTG
GTCAAAGGTCCTTCCTTAGAACTTACAAATTCATGGAATATTGGGATGCC
AGGAGGAGAAAAGGTAAACTGTGAGACAAAGCCAATTACATGAGTAAACA
ATCATATATATATATATATATATATATATATATGTGTGTCGCGCCNCNCN
CCCCCCTTCTCCCCTCCCCCCCCCCTCCCCCCCCCCCCTTCCTTTTTCTT
TTTCCCCTTTTCCCCTCCCCCTTTTTTTCTTTTCCCCNCCCCCCCCCCCC
CTCCCCTTCTCCCTTCCCTCCCTCCTTCCCCCCCCTTCCCCCCCTCCCCC
CCCCCCCCCCTTTCCCCCCCCTTCCCCCCCCCCCTTTTTTCTCCCCTCCT
CCCCCCTCCCCCCCCCTCTCTCCCCCTTTACTTCCCTTCTTCTCTCCCCC
CCCCCTTCCCCTCCCTCCCCCTCTCCTCCTCCCCCTCCTTTCTCTTTCCA
TCCCCCACTCCCCCCCCCCTCTCCCCCCCCCTTTTTCTTCCCCTCCCCTC
CTTCTGCCCTCTTTTCCCCCCCCCCCCCTTTCCCCCCTCTCTACCCCCCC
CTCTCCCTACCTACCCCCTCCCCCCCCCTTCCATCCTCTCCCCTTCTTCC
CCCCCCATCACTCCTTCTTCCTCCTTATTTTCCCCCCCCCCCTGCCCCCA
CCTTTCCCCTTCCCTTCCCCCCACCTCCCCCTCTCTCCCCCCACCT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAGATTAATGCTTTTTGA
TACCCATTTTGGATAATGCTACATTTAAACAGTACAAGAAAAGGCAAAGG
AAACTGGCAGCCCCTCCTCCCAACCTGAGGTCCTTGGCAAGAGCCGGATG
GGATGTCTCTCACCCACTAACTCCATCGCAAATGAAGCAGATGTTCTGTC
TTTGCCCCCAAAACTCTTATTCCGAAACAAAAAGATTAGTGAGGATTGAA
AAATGAGTGTGAGGAGACAGTGGAAACCCTTTATTAAATAAGCGTTGGTT
GTATTTAATTTTCAAATTTTTACTGGAGCCAGGGCGTGGTGGCCCATATC
TTTAATCCCAGTATTTGGGACCCCCAAGCACGTGAACTTCTTAGTTCAAG
GCCATCCTGGTCTTAAACCCTTGCTTAAAAAACAAAATTAACTAACTAAC
TAACTAACTAAGTAGCTAAAAAAAAAAAAAAAAAGTAAATGGGCTTCCAA
GGCCTTTCATTTTAACCCGCGACATGTTCTGCCTTTTGGTGGCCATTTAA
CTATTATCACCAAGAGGTAGTCGACAAGAAGACCAAGACCCCCTCAGAAT
TAGGGTCCGTAGGCTTTGGTGCCGAGTATTCTGGCTTAGCTAGACTAGCA
AGTGGTCAGAACAGGACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_k16.b1 MSMg01no150_k16.b1 CHROMAT_FILE:
MSMg01no150_k16.b1 PHD_FILE: MSMg01no150_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:17 2005
         (156 letters)



>mm_chr3_39974054_39974609
          Length = 556

 Score =  255 bits (132), Expect = 7e-73
 Identities = 138/140 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgtaaagacttactggtcaaaggtccttccttagaacttacaaattcatggaatattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgtaaagacttactggtcaaaggtccttccttagaacttacaaattcatggaatattg 260

                                                                       
Query: 61  ggatgccaggaggagaaaaggtaaactgtgagacaaagccaattacatgagtaaacaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggatgccaggaggagaaaaggtaaactgtgagacaaagccaattacatgagtaaataatc 320

                               
Query: 121 atatatatatatatatatat 140
           ||||||| ||||||||||||
Sbjct: 321 atatatacatatatatatat 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no150_k16.g1 MSMg01no150_k16.g1 CHROMAT_FILE:
MSMg01no150_k16.g1 PHD_FILE: MSMg01no150_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:17 2005
         (341 letters)



>mm_chr3_40059266_40060006
          Length = 741

 Score =  613 bits (317), Expect = e-180
 Identities = 335/341 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgagattaatgctttttgatacccattttggataatgctacatttaaacagtacaaga 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 catgagattaatgctttatgatacccattttggataatgctacatttaaacagtacaaga 438

                                                                       
Query: 61  aaaggcaaaggaaactggcagcccctcctcccaacctgaggtccttggcaagagccggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaggcaaaggaaactggcagcccctcctcccaacctgaggtccttggcaagagccggat 378

                                                                       
Query: 121 gggatgtctctcacccactaactccatcgcaaatgaagcagatgttctgtctttgccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggatgtctctcacccactaactccatcgcaaatgaagcagatgttctgtctttgccccc 318

                                                                       
Query: 181 aaaactcttattccgaaacaaaaagattagtgaggattgaaaaatgagtgtgaggagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaactcttattccgaaacaaaaagattagtgaggattgaaaaatgagtgtgaggagaca 258

                                                                       
Query: 241 gtggaaaccctttattaaataagcgttggttgtatttaattttcaaatttttactggagc 300
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 257 gtggaaaccctttattaaataagcgctggttgcatttaattttcaaatttttactggagc 198

                                                    
Query: 301 cagggcgtggtggcccatatctttaatcccagtatttggga 341
           ||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 197 cagggggtggtggcccacacctttaatcccagtatttggga 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)