Query= MSMg01no150_n11.b1 MSMg01no150_n11.b1 CHROMAT_FILE:
MSMg01no150_n11.b1 PHD_FILE: MSMg01no150_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:30 2005
(371 letters)
>mm_chr3_119878356_119879126
Length = 771
Score = 694 bits (359), Expect = 0.0
Identities = 365/367 (99%)
Strand = Plus / Minus
Query: 5 gaattccagacatcaccagctacagaaaacactccacagtcctcagaaaggtttcctcac 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaattccagacatcaggagctacagaaaacactccacagtcctcagaaaggtttcctcac 479
Query: 65 atagtcactaaactctgtgtatggtatgtgtgttacaaacttcccacaattgcgcaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atagtcactaaactctgtgtatggtatgtgtgttacaaacttcccacaattgcgcaagga 419
Query: 125 ttgtttgaaaagattacaaaaatcaaggctcagcattcatagaaaacttggaggggtgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgtttgaaaagattacaaaaatcaaggctcagcattcatagaaaacttggaggggtgcc 359
Query: 185 tgattcatcctctgtactgtaaattcctccaagtcatggcattcatggagaatgattcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgattcatcctctgtactgtaaattcctccaagtcatggcattcatggagaatgattcac 299
Query: 245 aatggcctcatttcaggaagtagttggaatactaaattgtttccacatttaaatttttaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aatggcctcatttcaggaagtagttggaatactaaattgtttccacatttaaatttttaa 239
Query: 305 aagaaaaagaaaaaggaggagaaggagacagaggagaaaggaaggaaggaaggaaggaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aagaaaaagaaaaaggaggagaaggagacagaggagaaaggaaggaaggaaggaaggaag 179
Query: 365 gaaggaa 371
|||||||
Sbjct: 178 gaaggaa 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_n11.g1 MSMg01no150_n11.g1 CHROMAT_FILE:
MSMg01no150_n11.g1 PHD_FILE: MSMg01no150_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:30 2005
(631 letters)
>mm_chr3_119823908_119824938
Length = 1031
Score = 1141 bits (590), Expect = 0.0
Identities = 625/642 (97%), Gaps = 11/642 (1%)
Strand = Plus / Plus
Query: 1 cagacagcactgctccgaagctgctgtaaagaacataggacacaccattagtcatacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacagcactgctccgaagctgctgtaaagaacataggacacaccattagtcatacagg 260
Query: 61 ggttgagggtcccaatatttaaggtccatttgggagctatagcactgacaaacacccctg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttgagggtcccaatatttaaggtccatttgggagctatagcactgacaaacaccccta 320
Query: 121 ctgctgtctgttgctggctactgccaccactctcttctcttggaggctgacagttacaat 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctatctgttgctggctactgccaccactctcttctcttggaggctgacagttacaat 380
Query: 181 acttgctaaggggtatggggctacaattggctgaagcagagggcaataagccttccactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgctaaggggtatggggctacaattggctgaagcagagggcaataagccttccactt 440
Query: 241 gactatttagatccataattgtttgtgctttagagcctcaggatataagctcctagctat 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gactatttagatccataattgtttgtgctttagagcctcaagatataagctcctagctat 500
Query: 301 caagacttagggctgtgatactttctgtctgcaagtccaggacttatgccttgggaactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagacttagggctgtgatactttctgtctgcaagtccaggacttatgccttgggaactc 560
Query: 361 agtgctctaagactgttgaatcttcaagagcttctctttgcttactcatgattttaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgctctaagactgttgaatcttcaagagcttctctttgcttactcatgattttaatca 620
Query: 421 ttagagaaaaaggactccaggcagctcagtagtaacaagtggaaaatttgatgaatcaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagagaaaaaggactccaggcagctcagtagtaacaagtggaaaatttgatgaatcaga 680
Query: 481 cactaaatatctctagactacataacactagcggtcttatagtcaaagatttaggaaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cactaaatatctctagactacataacactagcggtcttatagtcaaagatttaggaaaca 740
Query: 541 tcagggtgcaaaagct---ca-----t---tttcagatgctaaatactcaaggatgtatc 589
||||||||||||||| || | ||||||| ||||||||||||||||||||||
Sbjct: 741 ccagggtgcaaaagctagccaagagctcagtttcagacgctaaatactcaaggatgtatc 800
Query: 590 aaggcataactttctccaaaattttgctatggttaactttag 631
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 801 aaggcataactttctccaaacttttgctatggttaactttag 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
