Query= MSMg01no151_b20.b1 MSMg01no151_b20.b1 CHROMAT_FILE:
MSMg01no151_b20.b1 PHD_FILE: MSMg01no151_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:50 2005
(643 letters)
>mm_chr3_71089183_71090225
Length = 1043
Score = 1073 bits (555), Expect = 0.0
Identities = 604/621 (97%), Gaps = 4/621 (0%)
Strand = Plus / Plus
Query: 26 cattttggttaggcatggagaatttatcaaaaggagtctttgaactgaaccaggtataat 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cattttggttaggcatggagaatttatcaaaaggagtctttgaactgaaccaggtataat 285
Query: 86 aatatacagacataaagaaagattctgggtattgagtttggactttatgtttcagaaact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aatatacagacataaagaaagattctgggtattgagtttggactttatgtttcagaaact 345
Query: 146 ttaattttaaagaaaattctatttaccacagtatctaggattgaaaaataaaatgaaaca 205
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 346 ttaattttaaagaaaattctatttaccacagtatctaggtttgaaaaataaaatgaaaca 405
Query: 206 aatgataaaaataaaagatgacaaagcaacaaataagaaaaatgactagtgatatttgca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aatgataaaaataaaagatgacaaagcaacaaataagaaaaatgactagtgatatttgca 465
Query: 266 taacataaatgatatctacaattatgtagttgttgataaccattttgacctagccatagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 taacataaatgatatctacaattatgtagttgttgataaccattttgacctagccatagt 525
Query: 326 acactaaatcatt-agagaaggtctaccgacccaaatgatgaaacctgcaggttatttaa 384
|||||||||| || |||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct: 526 acactaaatc-ttcagagcaggtctactgacccaaatgatgagacctgcaggttatttaa 584
Query: 385 acaggaatgtccatatgacacagtttatttgtgaatatgcaagtacattttttggaaata 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 acaggaatgtccatatgacacagtttatttgtgaatatgcaagtacattttttggaaata 644
Query: 445 caagactaaatggtttcagacaaattattcattggttttcagatagagtgagctcataca 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 645 caagactaaatggtttcagacaaattattcattggttttcagatagagtgagctcaaaca 704
Query: 505 cacacaca--ttgccgtaaatctcccaaatatgccctggcaatgaatacacgacacagtt 562
|||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 705 cacacacacattgccataaatctcccaaatatgccctggcaatgaaaacacgacacagtt 764
Query: 563 aatatgattacaagctgtgtgcctagattggacagatctgccactacactactatcttcc 622
|||||||||||| |||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 765 aatatgattacatgctgcacgcctagattcgacagatctgccactacactaccatcttcc 824
Query: 623 acagcttatgagaccccttag 643
|||||||||||||||||||||
Sbjct: 825 acagcttatgagaccccttag 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_b20.g1 MSMg01no151_b20.g1 CHROMAT_FILE:
MSMg01no151_b20.g1 PHD_FILE: MSMg01no151_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:51 2005
(612 letters)
>mm_chr3_71252984_71253996
Length = 1013
Score = 1093 bits (565), Expect = 0.0
Identities = 601/613 (98%), Gaps = 1/613 (0%)
Strand = Plus / Minus
Query: 1 actttggctcatagttgaatgtggaatatcaagatgttgaaaaggcatggctaaagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 actttggctcatagttgaatgtggaatatcaagatgttgaaaaggcatggctaaagagcc 754
Query: 61 atctcctgcctgtggcactgagatgctgcctagtcatgactcaatgaatccagagacaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 atctcctgcctgtggcactgagatgctgcctagtcatgactcaatgaatccagagacagg 694
Query: 121 aaaatggggacatcttacacttgactgattttatattcagtttaaatttctatatcatgg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aaaatggggacatcttatacttgactgattttatattcagtttaaatttctatatcatgg 634
Query: 181 gatcaccagtgacaatccctttcaagtctgtctttatacctcagtgaacatttcctgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gatcaccagtgacaatccctttcaagtctgtctttatacctcagtgaacatttcctgaag 574
Query: 241 aaacaatcaaagggatatgcaaaaaggtgcttccttaatgttgaaggtattttgcaatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aaacaatcaaagggatatgcaaaaaggtgcttccttaatgttgaaggtattttgcaatcc 514
Query: 301 aatcagtctacaatctacattgagcattgcaaactgatctcacaacactgggaaagatat 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 513 aatcagtctacaatctacattgagcattgcaaactgatctcacaagactgggaaagagat 454
Query: 361 tcgaatgtgagcgtttgatagggagcaggagattaaactatgcattgaagagcatacaat 420
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 453 tcgaatgtgagcatttgatagggagcaggagattaaactatgcattaaagagtatacaat 394
Query: 421 gatgtacaattaacattaatgaccattcgaggcatcatatgtagaagctccaaaatatat 480
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 393 gatgtacaattaatattaacgatcattcgaggcatcatatgtagaagctccaaaatatat 334
Query: 481 acaaagacaaa-aaaattctaatgagaagaatttctcaaaattgggatttctttaatttt 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 333 acaaagacaaagaaaattctaatgagaagaatttctcaaaattgggatttcttgaatttt 274
Query: 540 taaatatgctttgtgtagcctgagtcattaataagaatatttttactgaaggactagaca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taaatatgctttgtgtagcctgagtcattaataagaatatttttactgaaggactagaca 214
Query: 600 catcttttcccac 612
|||||||||||||
Sbjct: 213 catcttttcccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
