BAC Information

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BAC

Clone NameMSMg01-151C22
Chromosome3 (Build37)
Map Location 92,526,495 - 92,526,859
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f
Downstream geneLOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151C22.T7 (MSMg01no151_c22.b1)MSMg01-151C22.TJ (MSMg01no151_c22.g1)
ACCAG353418AG353419
length747716
length of high quality
(start - end)
370 (45 - 414)141 (129 - 269)
definitionCHROMAT_FILE: MSMg01no151_c22.b1 PHD_FILE: MSMg01no151_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:55 2005CHROMAT_FILE: MSMg01no151_c22.g1 PHD_FILE: MSMg01no151_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAACCTTTCTTAGGTTTTATGTTTTTTCTTATAGTCAGTTCTTG
AACACATCCATCCTATACAAATTTGGTGTTGTCTAAGCCTCTCACTAGCA
TCTTCATTGATGTCTAAGCTTAGGAACAGGATCCAATTCCTAAGGACTTG
GATCACCGCAAAGGAACTTAACCTCTGAGGCAGAGTGAGGTATGTGTGGT
CACATGACCTTGACCTTTCGAAATCTTTCACTGTCTCAACTGGTTTGACT
TTATTCTCCTTCTCAGGTTGTTTCTAAAGGCTTAGCTACTGGGAGAGGTC
AGGAAATTATTCCTGATTTCCCAATGGCAGTTACACATGGCTCACCTTGG
GACTTACAGGATGCCCCCCCCCACGTGCCGATTGTCTCTCTGTGTGACAA
CACCCAGGTCCTCATCTGACCTGCACGAGCATAGGTCCGTATGAGTAGCA
TGCTAGCTAGAATAAGATTACAATCAAGCCTCGAGTGCGAGATCTGGACA
CTTACTCCCAGTAACTCGTGCATATTCTGAGAGTTTCAGTTATCCCAGTT
TTCTCTCTTCTAAAGCGCCCTTTTTCCTCTCCTGAATTATGCCACCAACC
CTGACCACCACCCCCCATATATACCTCCCACCGACTCTACTCCGCCATTT
CCTTTTTCCTCCCCCCGTCTCCACCTTACTCGCCCTGCCGCCCCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGTTAGACTCCAGAGAACCA
AATAACCCTCTTAAAAATTGGGTACAGAGATAAACAAAGAATCTCAACTG
AGGAATACAGAATGGCTAAGAAGCACCTAGAGAAATGTTCAACATCCCTA
GCCATCAAAGAAATGCAAATCAGAACAACCCTGAGATTCAACCTCACACC
AGTCAGAATGGCTAAGATCAAAAACTCAGGTAACAGTAGATGTTGGCAAG
GATGTGGAAAAAGAGGAACAGTCCTCCATTGTTGGCGGCATTGCCCGCTG
ATACAAAAACTGCGGAAATCAATCTGAAGATGCCTCCGCACCTTGAACAC
ACAACAAGGAAAGGGGGCGGCTGCCCCCCTCCTGAAACTATAATTAGCCC
AAACTGCAACATGGGAAAAAAGCGGACGCCCGATACCCAAAACGCCCCTA
TACATCATGCTTCCAACCTCCGAAAAACCTGGACGGCACTCCGGAGGGGC
CCGGACCCCGAAAAACCGCCAAAACCTCCCCCCCGCGAAAAAACCGCGGA
TACCTTCTTTTCCCCCCCTCTCCTGTGTCTCCCAAAAACCGTATGTGCCA
CCCCCCAGTACAAACGGGCAGCAAAAAGACCAGTAAAGGCGGGGGAAAAA
GACATAACAAAAAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_c22.b1 MSMg01no151_c22.b1 CHROMAT_FILE:
MSMg01no151_c22.b1 PHD_FILE: MSMg01no151_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:55 2005
         (370 letters)



>mm_chr3_92526291_92527060
          Length = 770

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaacctttcttaggttttatgttttttcttatagtcagttcttgaacacatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctttaacctttcttaggttttatgttttttcttatagtcagtacttgaacacatc 264

                                                                       
Query: 65  catcctatacaaatttggtgttgtctaagcctctcactagcatcttcattgatgtctaag 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catcctagacaaatttggtgttgtctaagcctctcactagcatcttcattgatgtctaag 324

                                                                       
Query: 125 cttaggaacaggatccaattcctaaggacttggatcaccgcaaaggaacttaacctctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttaggaacaggatccaattcctaaggacttggatcaccgcaaaggaacttaacctctga 384

                                                                       
Query: 185 ggcagagtgaggtatgtgtggtcacatgaccttgacctttcgaaatctttcactgtctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcagagtgaggtatgtgtggtcacatgaccttgacctttcgaaatctttcactgtctca 444

                                                                       
Query: 245 actggtttgactttattctccttctcaggttgtttctaaaggcttagctactgggagagg 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 actggtttgactttattctccttctcaggttgtttcaaaaggcttagctactgggagagg 504

                                                                       
Query: 305 tcaggaaattattcctgatttcccaatggcagttacacatggctcaccttgggacttaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaggaaattattcctgatttcccaatggcagttacacatggctcaccttgggacttaca 564

                
Query: 365 ggatg 369
           |||||
Sbjct: 565 ggatg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)