BAC Information

Click to search

BAC

Clone NameMSMg01-152M01
Chromosome3 (Build37)
Map Location 21,269,940 - 21,270,341
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M01.T7 (MSMg01no152_m01.b1)MSMg01-152M01.TJ (MSMg01no152_m01.g1)
ACCAG354544AG354545
length714698
length of high quality
(start - end)
402 (67 - 468)72 (300 - 371)
definitionCHROMAT_FILE: MSMg01no152_m01.b1 PHD_FILE: MSMg01no152_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:56 2005CHROMAT_FILE: MSMg01no152_m01.g1 PHD_FILE: MSMg01no152_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TGATCATATTTCCACTGTTCTTTTATACATAGCTCCATTAGTACCAGGAG
ATACTAATACTGTCATAAAAAGCTGCATAAATGTCAGTTTAACTTTCAGA
ATAAGACCTTAAGAGTCTAGGTTCCACACTAGAGGTGTAGAAGAATCATT
CCCAATGCTTCAAGAGAAAATGGGGTTTGGAGGTAAAGGAGACAAGAACC
CTACTTCTGAAGGTTGAAAGCAGAATTTATCTTCTGAAAATGCATAGATT
AGCCAGCTAGTCTTTAAACCACTGCAGTCCTTAGCCTGGGAGAAGGACAG
GGGGAGAAAGGAGAAAGGAATCACAGGCCTGTCACATTAAATACTCCCAC
ACTTGGTTTCAATTTCTGTCCGACTTCCCAGAGCTTCAGTAGCCCTCTTT
TCTTTTTCTTCTCTAATACGCTTTGTATTGATTTTTTTCTCCTGGTTTCT
GCTGACTCCACAGTCTGAACAGGCTTTGACCTTAAAGCCAAGGTCAAGTT
TGTATTCCTAGTAAAGAAAAAAAAAGATCAGAAAGAAATGACCTTGAACA
AAATTATATGATCAAGAAAAACAATGGACCCAGATACCTCTCCTAAAATA
GTAGAAAATGATGTCCTTCTCCCTAGGTTCCTTTTCCCATCCCATCTTCT
GAGATCAAAGTGAC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACTTAAAATATGCAGAAGAAGAAAGGACTCAGATTGCTAGACAC
CCTACCCACTGTTACCCAGAGAAGGAAGAACAATGATGCACACAAGAAGG
GAGAACTATACTCCTCAGAAAGCGAGCACAAGACTTGGCCAAATGCATAA
ATGGACTCATTTAGTGGATAAGCTCATACAACCAGTCAATGTATATGTAA
TAGACCTCATAGTTCTACCCAGAGATAGTAGAACAGTGTAAGGTATGCCA
GCAAGTGAATGCTTATGCAGTGAAGAGTAAACAGGGCAAAACAACCTAGG
GAGGATGGCCTGAAGTATATTGGGAGGTCGATTTTACAGAAGTTAAGCCA
GGAAAATATGGCGACAAATACTTTCTATAGTTTGTCGATACTTTCTTTGG
TCGCGTTGCCGTTTTCCCCATGAAGCAGGAAACAGCAACCATGGCAGCCA
ACAACATATTACACGAAATTTCCCGAGGCTAGGAGTGCCCAAGGTAACGG
AATCAGACAATGGTCCTGCCTTTGTTTCCAACGCAACTCAAGGACTGCCA
GACACTTTGGCCACCGACCGGNAACCCCATTGTAACAATTGCCCCCCGAG
ATGAGGGCACGTACACACAATGAACTGCACCCCCAAAACACACCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m01.b1 MSMg01no152_m01.b1 CHROMAT_FILE:
MSMg01no152_m01.b1 PHD_FILE: MSMg01no152_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:56 2005
         (402 letters)



>mm_chr3_21269740_21270541
          Length = 802

 Score =  762 bits (394), Expect = 0.0
 Identities = 400/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcttttatacatagctccattagtaccaggagatactaatactgtcataaaaagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcttttatacatagctccattagtaccaggagatactaatactgtcataaaaagctgc 260

                                                                       
Query: 61  ataaatgtcagtttaactttcagaataagaccttaagagtctaggttccacactagaggt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaatgtcagtttaactttcagaataagaccttaagagtctaggttccacactagaggt 320

                                                                       
Query: 121 gtagaagaatcattcccaatgcttcaagagaaaatggggtttggaggtaaaggagacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagaagaatcattcccaatgcttcaagagaaaatggggtttggaggtaaaggagacaag 380

                                                                       
Query: 181 aaccctacttctgaaggttgaaagcagaatttatcttctgaaaatgcatagattagccag 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aaccctacttctgaaggttgaaagcagaatgtatcttctgaaaatgcatagattagccag 440

                                                                       
Query: 241 ctagtctttaaaccactgcagtccttagcctgggagaaggacagggggagaaaggagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagtctttaaaccactgcagtccttagcctgggagaaggacagggggagaaaggagaaa 500

                                                                       
Query: 301 ggaatcacaggcctgtcacattaaatactcccacacttggtttcaatttctgtccgactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaatcacaggcctgtcacattaaatactcccacacttggtttcaatttctgtccgactt 560

                                                     
Query: 361 cccagagcttcagtagccctcttttctttttcttctctaata 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccagagcttcagtagccctcttttctttttcttctctaata 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)