BAC Information

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BAC

Clone NameMSMg01-152N04
Chromosome3 (Build37)
Map Location 71,230,363 - 71,230,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670542, EG625901, EG667377
Downstream geneLOC667385, LOC100041459
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152N04.T7 (MSMg01no152_n04.b1)MSMg01-152N04.TJ (MSMg01no152_n04.g1)
ACCAG354593AG354594
length751763
length of high quality
(start - end)
386 (50 - 435)180 (80 - 259)
definitionCHROMAT_FILE: MSMg01no152_n04.b1 PHD_FILE: MSMg01no152_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:02 2005CHROMAT_FILE: MSMg01no152_n04.g1 PHD_FILE: MSMg01no152_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTTAACTACTAGCAACTTTATAGATGCAAGTTATTGTAA
ATATTGGTAATGTGATTAAGATGATTAAAATTATCACATTCTTTGAGAAC
ACCAAACAGACATACAACTCACTAATGAAGGCAAAACCTATTCAATGACT
ACTCTTTTTAGATTGTTATTCTCTTGAGAGTCAAAGAACTACATAATCAC
ATCAAAGTTCCCTCCAAGAAATTCCTGGGTTAGTAGAATTTAAAACTGAT
ATTTATTGATGGAAAATAATAATTTACTTTTTAACACTATACTAAAACAT
GTTTTATAAACATATCCTATTTTCCTACGGCTATAATGGAACTATTAATT
TTTGTAAAATATTTCTTATAGATGCTGCTTAGGTTTTGTTGCTCTAGGCA
ACTTAATTATGTAGAGTAAGAAATATGCTTCTCTCTCACTCTGCGTGTGC
GCCTGTGTCGTGTACGTGTGTGCACGCACCGCAAGCCCAGGTATTGCTGT
CCTCGCTTCCTTCCTTCTTTCTTTTATATCCTACCCCTTTCTCCCTTTAT
CTTCCTCTCCCCCTACTATCCATCCTCACCCCCTCCCTTCTTCCTTCCTT
CCTCTTTTACCTCCCTTCCCCACTTACACTTCTCACTCTTTTTCCTAATC
ACACACATTCTTTTCATATCCTCACATCTCTCTCTCTTCCCCTTTTCCCC
T
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGGGATAGCCCCTT
TGGCTATCTATCTCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTG
GGATGTATGCTTGTTATAGTGTGTGTGTGTGTGTGTTGTGTGTTGGGCAC
ATGTGTTAGGTGCAGCATGTGCGGCCCGCACTTTCGCCATGGTAGCGTAC
GCTTTTGTTGCAGTGGAGGCGCGACCATCTCCTCAGATTCGGTTTGCCGC
TCTAAAAGAAATTATGCTGCGTTATGCTTTGGGTTGCGAGGCTAAGCACT
GCACAGAGGATAGCTTGCTGTTGGCATCCTGTGGAAGGTATGCCCGATTG
CATGAATGTTCAGTGTCCTAGCTCCCTTCCCCCATGACACATGACACGGG
CACCTGTTCAAGACCTCTCTGTCTTATGTACCTAAGGTACGCTTTCGATT
ATTCCCCCTATGTTCGCTTTTTGTGTACTTCACTTCTTTCTTCTCCTCCG
TATGCTTGTTCTGCTCCTTCTTTCCTACCTGGCCATCATTTTATCTATTC
TCCCCGTCCCTTTTTGATGCCCCCTGCTTTTATGCATTTTCCATATCTTC
CCCCCCGTGTTGCCCTTGCNCCCTGTTTTCCCTTTTTCACTTTTTCCCCT
ATTTATTTCCCTTGTTTTATGCTCTTTTTATTTCCTTACAACCTTGTGTT
TCTTTTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_n04.b1 MSMg01no152_n04.b1 CHROMAT_FILE:
MSMg01no152_n04.b1 PHD_FILE: MSMg01no152_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:02 2005
         (386 letters)



>mm_chr3_71230159_71230944
          Length = 786

 Score =  692 bits (358), Expect = 0.0
 Identities = 376/382 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttaactactagcaactttatagatgcaagttattgtaaatattggtaatgt 64
           |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 586 gaattcatttcaactaatagcaactttatagatgcaaattattgtaaatattggtaatgt 527

                                                                       
Query: 65  gattaagatgattaaaattatcacattctttgagaacaccaaacagacatacaactcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gattaagatgattaaaattatcacattctttgagaacaccaaacagacatacaactcact 467

                                                                       
Query: 125 aatgaaggcaaaacctattcaatgactactctttttagattgttattctcttgagagtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aatgaaggcaaaacctattcaatgactactctttttagattgttattctcttgagagtca 407

                                                                       
Query: 185 aagaactacataatcacatcaaagttccctccaagaaattcctgggttagtagaatttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 406 aagaactacataatcacatcaaagttccctccaagaaattcctgggttagtagcatttaa 347

                                                                       
Query: 245 aactgatatttattgatggaaaataataatttactttttaacactatactaaaacatgtt 304
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 346 aactgatatttatttatggaaaataataatttactttttaacactataataaaacatgtt 287

                                                                       
Query: 305 ttataaacatatcctattttcctacggctataatggaactattaatttttgtaaaatatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttataaacatatcctattttcctacggctataatggaactattaatttttgtaaaatatt 227

                                 
Query: 365 tcttatagatgctgcttaggtt 386
           ||||||||||||||||||||||
Sbjct: 226 tcttatagatgctgcttaggtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)