BAC Information

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BAC

Clone NameMSMg01-152P19
Chromosome3 (Build37)
Map Location 136,872,166 - 137,023,662
singlet/doubletdoublet
Overlap geneLOC100039447, Emcn
Upstream geneBank1, LOC668868, Ppp3ca, LOC668870
Downstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152P19.T7 (MSMg01no152_p19.b1)MSMg01-152P19.TJ (MSMg01no152_p19.g1)
ACCAG354711AG354712
length726720
length of high quality
(start - end)		529 (72 - 600)444 (77 - 520)
definitionCHROMAT_FILE: MSMg01no152_p19.b1 PHD_FILE: MSMg01no152_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:15 2005CHROMAT_FILE: MSMg01no152_p19.g1 PHD_FILE: MSMg01no152_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,872,166 - 136,872,694)(137,023,307 - 137,023,662)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTACATGAATTCACACATGCAACTACATACTTCCATACCATGTAC
TACTCACCAAAGTAACACATTTTTTTTAAGAAGTATTTTTAGAGCTAGTA
CAAGTAGATTCCCTATATTGGGTCTTCCTATTTGTAGTGGCTAATGGATG
AACATAACCTCGGTGGATATTTGTTAACATTTGAATTTGTAGCCAGCCTT
TCTACTCGGTAGTGATCCTCGTTCAACCATAAACACAGAAGTCAAGCTAG
GGAATGAAATTCATCTTTGCCAATCTTTTCTCTAAGAACTTAGCCTTGTT
GCTGTTATACCTGATATAGCCTTTCTCCCCCATGATTCGTGATCTAGCTT
CCTACCCATAGTAGTCAAAGCTCTCATCACTTAAAAACAGAAACTGACTC
AGATTAACTTAAACAGAAAAAAAGGATATTTTAGGAGGTGTCAGGTTATA
GAAGTTATGAGATTATGGAGAAGAAAATTTGTACCTTAGTCCAAAGAACT
GAAGCCCCAGTAAAAACACTCTTGTGGGGACTCTGCTTTGGATACCACTG
ACAGAGGCATGGCCTGCATCATGTGTCAATCATCTCCTAGGGCTCTCTTT
TGATCTTCACTCCATCTCCGCGGTCCGAGTGAACTCATGCACTTTGCTCT
TTGAGAGCCCCATGCTCCAGCTTGTG

TCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCTACACTTGGGCCCCTACTTT
TCAGGTAGCCAACTGGACAATGACCTTATCCCTCCAGGCTAAGGAACTTC
GAGATGCTCAGGGGAGACACTTTATGACACTAGTTATCTAAGAAATCTGA
TCTTTTCATTTGAAAGAATAATTGAAATCCAACTTTGAAAGAGCAGTAAA
TTAAATGACATTTTAAAATATATTAAATAAGGAAAGAGACAAGATTAAAA
TAAGAGAGTTCGAGAAATCATTGTTTATTTGTAGGATAAAGCTTAGAAGG
GATAAGTATGAAATTAAAACCAAAATGTAAGAGGAAAACTAAAAAATGGC
AGAATGGCATAAGAATTAAGAACAACAGTAAATGCTACCTCCCCCACAAA
TCCATGTTTAGGAATAAAGATGGAGTCATATGATTTTTTTTTTTTTTTTT
TTGGCTTTTCAAGACAGGGCTTCTCTGCATAGTCCTGGCTGTCCTGGAAC
CCACTTTGCGGACCAGGCTGGCCTCATACTCATAAATCTGCCTGCCTCTG
TCTCCCGAGTGCTGGGATTAAAGGCATATGCCACCACGCCCAGCATGACA
TTTTATTTTTAACTCTTGACACCCTTGTAATACTTTGTATCTGCTTGGCC
TAGTGCATGGCCTCATTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_p19.b1 MSMg01no152_p19.b1 CHROMAT_FILE:
MSMg01no152_p19.b1 PHD_FILE: MSMg01no152_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:15 2005
         (529 letters)



>mm_chr3_136871966_136872894
          Length = 929

 Score = 1000 bits (517), Expect = 0.0
 Identities = 526/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcaactacatacttccataccatgtactactcaccaaagtaacacattttttttaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 atgcaactacatacttccataccatgtactactcaccaaagtaacacatttttttaaaga 260

                                                                       
Query: 61  agtatttttagagctagtacaagtagattccctatattgggtcttcctatttgtagtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatttttagagctagtacaagtagattccctatattgggtcttcctatttgtagtggc 320

                                                                       
Query: 121 taatggatgaacataacctcggtggatatttgttaacatttgaatttgtagccagccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatggatgaacataacctcggtggatatttgttaacatttgaatttgtagccagccttt 380

                                                                       
Query: 181 ctactcggtagtgatcctcgttcaaccataaacacagaagtcaagctagggaatgaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctactcggtagtgatcctcgttcaaccataaacacagaagtcaagctagggaatgaaatt 440

                                                                       
Query: 241 catctttgccaatcttttctctaagaacttagccttgttgctgttatacctgatatagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctttgccaatcttttctctaagaacttagccttgttgctgttatacctgatatagcc 500

                                                                       
Query: 301 tttctcccccatgattcgtgatctagcttcctacccatagtagtcaaagctctcatcact 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tttctcctccatgattcgtgatctagcttcctacccatagtagtcaaagttctcatcact 560

                                                                       
Query: 361 taaaaacagaaactgactcagattaacttaaacagaaaaaaaggatattttaggaggtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaaacagaaactgactcagattaacttaaacagaaaaaaaggatattttaggaggtgt 620

                                                                       
Query: 421 caggttatagaagttatgagattatggagaagaaaatttgtaccttagtccaaagaactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggttatagaagttatgagattatggagaagaaaatttgtaccttagtccaaagaactg 680

                                                            
Query: 481 aagccccagtaaaaacactcttgtggggactctgctttggataccactg 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagccccagtaaaaacactcttgtggggactctgctttggataccactg 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no152_p19.g1 MSMg01no152_p19.g1 CHROMAT_FILE:
MSMg01no152_p19.g1 PHD_FILE: MSMg01no152_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:15 2005
         (444 letters)



>mm_chr3_137022903_137023746
          Length = 844

 Score =  688 bits (356), Expect = 0.0
 Identities = 356/356 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctacacttgggcccctacttttcaggtagccaactggacaatgaccttatccctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 accctacacttgggcccctacttttcaggtagccaactggacaatgaccttatccctcca 701

                                                                       
Query: 61  ggctaaggaacttcgagatgctcaggggagacactttatgacactagttatctaagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggctaaggaacttcgagatgctcaggggagacactttatgacactagttatctaagaaat 641

                                                                       
Query: 121 ctgatcttttcatttgaaagaataattgaaatccaactttgaaagagcagtaaattaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctgatcttttcatttgaaagaataattgaaatccaactttgaaagagcagtaaattaaat 581

                                                                       
Query: 181 gacattttaaaatatattaaataaggaaagagacaagattaaaataagagagttcgagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gacattttaaaatatattaaataaggaaagagacaagattaaaataagagagttcgagaa 521

                                                                       
Query: 241 atcattgtttatttgtaggataaagcttagaagggataagtatgaaattaaaaccaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atcattgtttatttgtaggataaagcttagaagggataagtatgaaattaaaaccaaaat 461

                                                                   
Query: 301 gtaagaggaaaactaaaaaatggcagaatggcataagaattaagaacaacagtaaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtaagaggaaaactaaaaaatggcagaatggcataagaattaagaacaacagtaaa 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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