Query= MSMg01no153_b14.b1 MSMg01no153_b14.b1 CHROMAT_FILE:
MSMg01no153_b14.b1 PHD_FILE: MSMg01no153_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:24 2005
(518 letters)
>mm_chr3_120148479_120149396
Length = 918
Score = 938 bits (485), Expect = 0.0
Identities = 506/513 (98%), Gaps = 2/513 (0%)
Strand = Plus / Plus
Query: 7 gaattcagccctctcccaaaccttactgatggttgatggctgtaaggtagtattagagat 66
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagtcctcacctaaaccttactgatggttgatggctgtaaggtagtattagagat 266
Query: 67 tcaactctaacactatactctcaattcattacatcacaggacatagataaaaaagacaca 126
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcaactctaacactatactctctattcattacatcacaggacatagataaaaaagacaca 326
Query: 127 atcagagttaactcctttcctacccatgctatgtctctttaatcatctacaaagcaaatg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atcagagttaactcctttcctacccatgctatgtctctttaatcatctacaaagcaaatg 386
Query: 187 atgcagaagatcttgctcagcccaatgccagaacttaaacttcaaagctgacattctcat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atgcagaagatcttgctcagcccaatgccagaacttaaacttcaaagctgacattctcat 446
Query: 247 ggctaatgaagcagatgtgttatcaaaagatcctcacatgaaattagaggtggcaactca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggctaatgaagcagatgtgttatcaaaagatcctcacatgaaattagaggtggcaactca 506
Query: 307 actgcaaaggtctgttatgttgtgtcaccgaaagaaatgaaggtgcttcgaacatcttt- 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 actgcaaaggtctgttatgttgtgtcaccgaaagaaatgaaggtgcttcgaacat-tttc 565
Query: 366 tcagaggcaactgtatcctttgaaggctgctagtataactcaggaactgcttcaagtcat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcagaggcaactgtatcctttgaaggctgctagtataactcaggaactgcttcaagtcat 625
Query: 426 gggtctttggacctgggagatttggactcaataagctaatgagtgcctttggatttaaag 485
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 626 gggtctttggacctgggagatttagactcaataagctaatgagtgcctttggatttaaag 685
Query: 486 cagtatgttttgttgttgttgtttgtttgattg 518
|||||||||||||||||||||||||||||||||
Sbjct: 686 cagtatgttttgttgttgttgtttgtttgattg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_b14.g1 MSMg01no153_b14.g1 CHROMAT_FILE:
MSMg01no153_b14.g1 PHD_FILE: MSMg01no153_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:24 2005
(587 letters)
>mm_chr3_120257538_120258524
Length = 987
Score = 1120 bits (579), Expect = 0.0
Identities = 585/587 (99%)
Strand = Plus / Minus
Query: 1 tctctagaaatgtttgtacccttctttttgaagcccaaggaaaacgataaattttccaat 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 787 tctctagaaatgtttgtacccttctttttgaagccaaaggaaaacgataaatttgccaat 728
Query: 61 ataaagatgtcatgagagagccaactgcaagagctcataggtctagagactgtttgcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ataaagatgtcatgagagagccaactgcaagagctcataggtctagagactgtttgcttt 668
Query: 121 ttaaatatccacccctgaaaaccacaaataagacagaatagactgtctcagagctgtcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ttaaatatccacccctgaaaaccacaaataagacagaatagactgtctcagagctgtcta 608
Query: 181 aagagatacaactagtaagagtgatcagagttatattgtagttgaccgtaattgtgataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aagagatacaactagtaagagtgatcagagttatattgtagttgaccgtaattgtgataa 548
Query: 241 taagaatatataggaatcacattgcaaatttggcaacaatcactctttgctacacagtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taagaatatataggaatcacattgcaaatttggcaacaatcactctttgctacacagtta 488
Query: 301 tttccttttgggattaatgtgcattctttgaaagccttgaaatttggagcatgtatctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttccttttgggattaatgtgcattctttgaaagccttgaaatttggagcatgtatctat 428
Query: 361 ctttttctgaagaggtgagagcacttaatggtgacactagtattgacctcagaggcaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctttttctgaagaggtgagagcacttaatggtgacactagtattgacctcagaggcaaaa 368
Query: 421 caaggacagatgatacttcagagccaagaagtctgtggaagtcaccagtgctgtttcagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caaggacagatgatacttcagagccaagaagtctgtggaagtcaccagtgctgtttcagg 308
Query: 481 cctaaaactcctctcttgttcttttcaggacttccttcacctctgtcatctgtctttcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cctaaaactcctctcttgttcttttcaggacttccttcacctctgtcatctgtctttcca 248
Query: 541 gtagaggattctgaactaccagggagataataaacctgtctttgggg 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtagaggattctgaactaccagggagataataaacctgtctttgggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
