Query= MSMg01no153_d09.b1 MSMg01no153_d09.b1 CHROMAT_FILE:
MSMg01no153_d09.b1 PHD_FILE: MSMg01no153_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:32 2005
(613 letters)
>mm_chr3_86109073_86110084
Length = 1012
Score = 1069 bits (553), Expect = 0.0
Identities = 582/593 (98%), Gaps = 5/593 (0%)
Strand = Plus / Minus
Query: 8 gaattcatcatc--tcctggatacataggccacagagccaagtcacatacagaagaattt 65
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaattcatcatcagt--tggatacataggccacagagccaagtcacatacagaagaattt 533
Query: 66 tgaaaaataatggaaagctcatttaaatttctcaataaatgaaataagatcactgtatta 125
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgaaaaataatggaaagttcatttaaatttctcaataaatgaaataagatcactgtatta 473
Query: 126 tacataatttcactgaactatgcagccacacgcactctcatgttctacaatttatcatag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tacataatttcactgaactatgcagccacacgcactctcatgttctacaatttatcatag 413
Query: 186 aattcatgtgtctctgcctttgctacaactcaaccctctaatacaggatataaaatatgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aattcatgtgtctctgcctttgctacaactcaaccctctaatacaggatataaaatatgt 353
Query: 246 caacatacaacctaagttttaaagacaaaaatccccttgcctcccattaaaatttttaaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caacatacaacctaagttttaaagacaaaaatccccttgcctcccattaaaatttttaaa 293
Query: 306 tttcaattatacaaatggatgacaaaaaaacctaaaatataaaaacttgtatcctcataa 365
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 292 tttcaattatacaaatggatgac-aaaaaacctaaaatataaaaacttgtatcctcataa 234
Query: 366 taaacccctgccaatttaaaatgttttatacacacacacatatacatatacatatatata 425
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 233 taaacccctgccaatttaaaatgttttatacacacacacatatatatatacatatatata 174
Query: 426 catatatatacatatatatatgtattcatgttctgtttgtcttgatcggtttttcctttt 485
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tatatacatatatatatatatatattcatgttctgtttgtcttgatcggtttttcctttt 114
Query: 486 ttgagatagtgtttctacatagtccttactgtcccagaactcattgtgtagaccaggctg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttgagatagtgtttctacatagtccttactgtcccagaactcattgtgtagaccaggctg 54
Query: 546 acctaaactcacagtgatatgcctgcctctgcctaccaagtattggcattaaa 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 acctaaactcacagtgatatgcctgcctctgcctaccaagtattggcattaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space: 604206
Effective search space used: 604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_d09.g1 MSMg01no153_d09.g1 CHROMAT_FILE:
MSMg01no153_d09.g1 PHD_FILE: MSMg01no153_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:32 2005
(533 letters)
>mm_chr3_85968075_85969003
Length = 929
Score = 996 bits (515), Expect = 0.0
Identities = 528/535 (98%), Gaps = 6/535 (1%)
Strand = Plus / Plus
Query: 1 tgggaaatagccagaggcacaggagatttgccaggacactaaggagttggaggtaaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaaatagccagaggcacaggagatttgccaggacactaaggagttggaggtaaacca 260
Query: 61 gtcaggtagctgaactcaggttagaataaagggaagtttgcctgggaaagctgaggagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaggtagctgaactcaggttagaataaagggaagtttgcctgggaaagctgaggagac 320
Query: 121 aaggagaggaaaccagccaaatagctgaacccaggttagactaaaagggatagataatac 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 321 aaggagaggaaaccagccaaatagatgaacccaggttagactaaaagggata----atac 376
Query: 181 ggtaagagcaagtccaagaacaggctgactcttatggtctatttattaataaatacctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggtaagagcaagtccaagaacaggctgactcttatggtctatttattaataaatacctag 436
Query: 241 gctcagggtcattatttaagggaactaagtggctggaagaaaagcttgattttttttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gctcagggtcattatttaagggaactaagtggctggaagaaaagcttgattttttttttt 496
Query: 301 tttttt--acagcagagtacttgctatttgtccctctatttgagatatttaagatgtggg 358
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttttttttacagcagagtacttgctatttgtccctctatttgagatatttaagatgtggg 556
Query: 359 tgcagactctgagatcctccactgggcaagagaatccattcctctgccatgtgagataag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgcagactctgagatcctccactgggcaagagaatccattcctctgccatgtgagataag 616
Query: 419 gaggggtttgctaggttgtttggtctgacctacatgcccagagctggccggacctatgca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaggggtttgctaggttgtttggtctgacctacatgcccagagctggccggacctatgca 676
Query: 479 gccagaggcagaagcagcagacatttttcccatgcatccatgtcctgtaatgagg 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gccagaggcagaagcagcagacatttttcccatgcatccatgtcctgtaatgagg 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 929
Length adjustment: 10
Effective length of query: 523
Effective length of database: 919
Effective search space: 480637
Effective search space used: 480637
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
