BAC Information

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BAC

Clone NameMSMg01-153K02
Chromosome3 (Build37)
Map Location 77,320,438 - 77,485,865
singlet/doubletdoublet
Overlap geneDnmt3a-ps1
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153K02.T7 (MSMg01no153_k02.b1)MSMg01-153K02.TJ (MSMg01no153_k02.g1)
ACCAG355171AG355172
length703702
length of high quality
(start - end)		660 (44 - 703)629 (71 - 699)
definitionCHROMAT_FILE: MSMg01no153_k02.b1 PHD_FILE: MSMg01no153_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:03 2005CHROMAT_FILE: MSMg01no153_k02.g1 PHD_FILE: MSMg01no153_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:03 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(77,485,427 - 77,485,865)(77,320,438 - 77,321,066)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTAACATCTGACGACAAAGAAAGGTGTCAGATCACCTTAAATGATG
CTTGTAATCCTCCACACGAGAACCTGTAAAACAAACACCAAGGTGTTTTA
ATATCTGACTTATTTGTCCAGCCTCATATCTCTGAGCTTTTATGTTACAA
AATGTTCTTCAGTTTAAGGTGTATGGCTCTTAACTGTGACACATGGAGAT
ATTTTTATTATAATTCTCTTGTCCATATTAATTTCTATAACATCCTATAA
AAATCTTTTAGCATTTTACATTTATGTATAATGATGTTCATACCCTTAGA
TATTTAAACAAACACCATGGTATTTAGGAAGTATGTATTTTGTTGTAGAA
CTTTAGGAGACATTCTCCTTATTTTCAAAGACACCTGGTAATATAATACC
AATTTTGAATGTAGTTATTTTCCATACTTTATTTCTAAAAGAGCACTCCT
GCAACCTGTTGCTGTAGATCTTATAAACTCATAGAATTCCTAGAATTCCT
GTGAAGGGATTCTTTCTGGTGGTAGGATGTGCTCTTCTCAAACTTTCCTC
TGTACTCACTTCAAAAGTTTGCAATATTTTGAAGCTTAAGTACATATTCA
TATTTATGCATATGTGTAAATGTATTTTTATGTACAAAGCACATTTTTTA
TAN

ATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTAAATTGATACAAGCAACTTAAAGTCTTC
TACAGCATAAACGCTGTAATTAGAGCTCTGTAAACTGTCATGTGTCATGA
GCTGATTGCACTCGAAAAAAAAGCAGACTTGGAACAAATTTATGATCAAG
CAAACATTTCTTCTAGATTAGCTGTAAAACCATTATCTAGAAACTAAATG
TCATAAACTAAGAATGGACAATTTGCTGTAGGTGCAAGGACAAAAAATAA
ACTATTGTATACCTACACAAAACTTCAATGTAACAAGACACAAATCAGAT
GATTTTCTCTTGACAAAACCATGCTAACTTGTGACAAAAAAATCATTGCT
TTAAACTTTAATGAACTAATGAGGGCTAGTAACTGGTAATTTATGTTTAG
TGAGATAGTAGTCTTAATAAGAAGACATATATAAAACTCTGTGGTTAGTT
CTTACGTCTTATTGATTTATGACTTGAATTATTTCCTTAAACTTACTATG
AACCTATTGAGATGTACGTGTATTTAGAAAAATCATCTATTCAATTATCC
TCTGTAATAATTCTGCCTGTTGGATATATGAGGTAATATTTTAGAGACAG
TTATACTGAAAACACTAAAGAAAGCTTTTTTGAGCTTTTTCTTTGGTTCA
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_k02.b1 MSMg01no153_k02.b1 CHROMAT_FILE:
MSMg01no153_k02.b1 PHD_FILE: MSMg01no153_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:03 2005
         (660 letters)



>mm_chr3_77485223_77486282
          Length = 1060

 Score =  810 bits (419), Expect = 0.0
 Identities = 434/439 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaacatctgacgacaaagaaaggtgtcagatcaccttaaatgatgcttgtaa 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaattcagtaacatctgaggacaaagaaaggtgtcagatcaccttaaatgatgcttgtaa 584

                                                                       
Query: 65  tcctccacacgagaacctgtaaaacaaacaccaaggtgttttaatatctgacttatttgt 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ccctccacacgagaacctgtaaaacaaacaccaaggtgttttaatatctgacttatttgt 524

                                                                       
Query: 125 ccagcctcatatctctgagcttttatgttacaaaatgttcttcagtttaaggtgtatggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccagcctcatatctctgagcttttatgttacaaaatgttcttcagtttaaggtgtatggc 464

                                                                       
Query: 185 tcttaactgtgacacatggagatatttttattataattctcttgtccatattaatttcta 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcttaactgtgacacatggatatatttttattataattctcttgtccatattaatttcta 404

                                                                       
Query: 245 taacatcctataaaaatcttttagcattttacatttatgtataatgatgttcataccctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 403 taacatcctataaaaatcttttagcattttacatttatgtataatgatgttcataccatt 344

                                                                       
Query: 305 agatatttaaacaaacaccatggtatttaggaagtatgtattttgttgtagaactttagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agatatttaaacaaacaccatggtatttaggaagtatgtattttgttgtagaactttagg 284

                                                                       
Query: 365 agacattctccttattttcaaagacacctggtaatataataccaattttgaatgtagtta 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 283 agacattctccttattttcaaagacatctggtaatataataccaattttgaatgtagtta 224

                              
Query: 425 ttttccatactttatttct 443
           |||||||||||||||||||
Sbjct: 223 ttttccatactttatttct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no153_k02.g1 MSMg01no153_k02.g1 CHROMAT_FILE:
MSMg01no153_k02.g1 PHD_FILE: MSMg01no153_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:03 2005
         (629 letters)



>mm_chr3_77320238_77321266
          Length = 1029

 Score = 1162 bits (601), Expect = 0.0
 Identities = 622/629 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaattgatacaagcaacttaaagtcttctacagcataaacgctgtaattagagctctg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatttgatacaagcaacttaaagtcttctacagcataaacgctgtaattagagctctg 260

                                                                       
Query: 61  taaactgtcatgtgtcatgagctgattgcactcgaaaaaaaagcagacttggaacaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaactgtcatgtgtcatgagctgattgcactcgaaaaaaaagcagacttggaacaaatt 320

                                                                       
Query: 121 tatgatcaagcaaacatttcttctagattagctgtaaaaccattatctagaaactaaatg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tatgatcaagcaaacatttcttctaggttagctgtaaaaccattatctagaaactaaatg 380

                                                                       
Query: 181 tcataaactaagaatggacaatttgctgtaggtgcaaggacaaaaaataaactattgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcataaactaagaatggacaatttgctgtaggtgcaaggacaaaaaataaactattgtat 440

                                                                       
Query: 241 acctacacaaaacttcaatgtaacaagacacaaatcagatgattttctcttgacaaaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctacacaaaacttcaatgtaacaagacacaaatcagatgattttctcttgacaaaacc 500

                                                                       
Query: 301 atgctaacttgtgacaaaaaaatcattgctttaaactttaatgaactaatgagggctagt 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgctaacttgtgacaaaaaaattattgctttaaactttaatgaactaatgagggctagt 560

                                                                       
Query: 361 aactggtaatttatgtttagtgagatagtagtcttaataagaagacatatataaaactct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactggtaatttatgtttagtgagatagtagtcttaataagaagacatatataaaactct 620

                                                                       
Query: 421 gtggttagttcttacgtcttattgatttatgacttgaattatttccttaaacttactatg 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gtggttagttcttacgtcttattgatttatgacatgaattatttccttaaacttactatg 680

                                                                       
Query: 481 aacctattgagatgtacgtgtatttagaaaaatcatctattcaattatcctctgtaataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacctattgagatgtacgtgtatttagaaaaatcatctattcaattatcctctgtaataa 740

                                                                       
Query: 541 ttctgcctgttggatatatgaggtaatattttagagacagttatactgaaaacactaaag 600
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctgccttttgggtatatgaggtaatattttagagacagttatactgaaaacactaaag 800

                                        
Query: 601 aaagcttttttgagctttttctttggttc 629
           |||| ||||||||||||||||||||||||
Sbjct: 801 aaaggttttttgagctttttctttggttc 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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