BAC Information

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BAC

Clone NameMSMg01-153O24
Chromosome3 (Build37)
Map Location 12,595,041 - 12,595,471
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667999, EG621965
Downstream geneLOC100039798, EG668033, LOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153O24.T7 (MSMg01no153_o24.b1)MSMg01-153O24.TJ (MSMg01no153_o24.g1)
ACCAG355373AG355374
length704695
length of high quality
(start - end)
431 (68 - 498)513 (71 - 583)
definitionCHROMAT_FILE: MSMg01no153_o24.b1 PHD_FILE: MSMg01no153_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:26 2005CHROMAT_FILE: MSMg01no153_o24.g1 PHD_FILE: MSMg01no153_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACAGATCCGCGGAA
TTCCAATACACTTCTCTTCTGCCCCTTTACTCTGGGCTTCTAGTGAGTCA
GTACACCATGACCTGACCATACGGTGGAACAAGACTTAAGGAACAGGATA
GTACCTCACCATCCCATTCAAGCACCTTCTACAAAGATGTCAACATCTTT
CACTGTATCCCACATTGAAACATTTCTAATAACTCCCAAAGTTCCATTCT
AGAGACCAGTCTCTAACTCATAGTCCTTTTATGGATACTTAACACCCTAA
CTGTTATTATTGTATGAAATAACTGTGTTATTATTATTGTGTGAAATACA
GGCAAATGCAGTTTGATACTACTCAAGGAGCTTTAATTTGATCCCAGAAC
ATGAAGAGATCTGTAAATATTTTAAAGCATTTATTTCAGGGTTTCACTTC
AGAGAAATCATAATTGATACTGCCCATAATTTGAAAAACTGACTTCACAT
CAAAATTTCAAAGAACAATGTATAGTTGTGAATTGCTACAATTTTTCTTG
CATCCAAAGCATAATCTTTTGAAAAAAATAAAGTTCTGGTTAATAATAAT
GCATTTAAAGAGCATGCCATCAAGGGCATTTCTTGGCCTAGAGCTTAAAG
TGTTGATGCCTTCTTTTCCACAAAATTTTATTCTAATTGCCCTATCCAGG
GTTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCCAAATTCTCACCTGAGGAATACCGAATGGCTGAGAA
GCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCA
AAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGGCTGAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCAAGAATGTGGAGAAAGAGGAACCCT
CCTCGATTGCTGGTGGGAATGCAAGCTTGTACAAACACTTTGGAAATCAG
TCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCA
ATACCTCTCTTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAAGA
CACATGCTCCACTATGATCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCACTCAACAGAGGAATGGATACAGAAAATGTGG
TACATTTATACAATGAAGCTATAATACTATTCAGCTATTAAAAAGAACGA
ATTTATGAAATTTCTAGGCAAATGGATGAACCTGGAGGGCATCATCCTGA
GTGAGGTGACCCAATGACAAAAAAACTCACATGATATGTACTCACTGAAA
AGTGTATATTACCCCAGAAACCTAGAATACCCTAGATTCTAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_o24.b1 MSMg01no153_o24.b1 CHROMAT_FILE:
MSMg01no153_o24.b1 PHD_FILE: MSMg01no153_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:26 2005
         (431 letters)



>mm_chr3_12594841_12595671
          Length = 831

 Score =  787 bits (407), Expect = 0.0
 Identities = 425/431 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcccctttactctgggcttctagtgagtcagtacaccatgacctgaccatacggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcccctttactctgggcttctagtgagtcagtacaccatgacctgaccatacggtgg 260

                                                                       
Query: 61  aacaagacttaaggaacaggatagtacctcaccatcccattcaagcaccttctacaaaga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aacaagacttaaggaacaggatagtacctcactatcccattcaagcaccttctacaaaga 320

                                                                       
Query: 121 tgtcaacatctttcactgtatcccacattgaaacatttctaataactcccaaagttccat 180
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 321 tgtcaacatctttcactgtatcccacattgaatcatttctactaactcccaaagttccat 380

                                                                       
Query: 181 tctagagaccagtctctaactcatagtccttttatggatacttaacaccctaactgttat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tctagagaccagtctctaactcatagtccttttgtggatacttaacaccctaactgttat 440

                                                                       
Query: 241 tattgtatgaaataactgtgttattattattgtgtgaaatacaggcaaatgcagtttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattgtatgaaataactgtgttattattattgtgtgaaatacaggcaaatgcagtttgat 500

                                                                       
Query: 301 actactcaaggagctttaatttgatcccagaacatgaagagatctgtaaatattttaaag 360
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 actactcaaggagcttgaatttgatcccagaacatcaagagatctgtaaatattttaaag 560

                                                                       
Query: 361 catttatttcagggtttcacttcagagaaatcataattgatactgcccataatttgaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catttatttcagggtttcacttcagagaaatcataattgatactgcccataatttgaaaa 620

                      
Query: 421 actgacttcac 431
           |||||||||||
Sbjct: 621 actgacttcac 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)