Query= MSMg01no153_p14.b1 MSMg01no153_p14.b1 CHROMAT_FILE:
MSMg01no153_p14.b1 PHD_FILE: MSMg01no153_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:28 2005
(672 letters)
>mm_chr3_24259646_24260723
Length = 1078
Score = 1224 bits (633), Expect = 0.0
Identities = 656/667 (98%), Gaps = 6/667 (0%)
Strand = Plus / Plus
Query: 12 tctatattttaccaagtacttctgctttattttgtgaagcaaattttatcatatcaatag 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tctatattttagtaagtacttctgctttattttgtgaagcaaattttatcatatcaatag 271
Query: 72 ataaatattatggctaattgaatgtatttcagcattcacatctatgtgcagtaaattaga 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ataaatattatggctaattgaatgtatttcagcattcacatctatgtgcagtaaattaga 331
Query: 132 aattcataacaagaaagttgaaattaataatattttaagaacacaaatcagaaaagccag 191
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 332 aattcataacaagaaagttgaaattaataatattttaaaaacacaaatcagaaaagccag 391
Query: 192 ctgcatttttttagtatttcaatatacataagattttctcctataccatgctggtgcaca 251
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgcatttttttagtatgtcaatatacataagattttctcctataccatgctggtgcaca 451
Query: 252 cacattggtgttattattttgagagaattgatttaactttaacataaacagacattggtg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cacattggtgttattattttgagagaattgatttaactttaacataaacagacattggtg 511
Query: 312 ctcttcattttactttaacttaaaatgggtccaagaaatcgctctggctgtaaattaaag 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctcttcattttactttaacttaaaatgggtccaagaaatcgctctggctgtaaattaaag 571
Query: 372 atata------aataaaagtggaggctgaatggttctaaacactaagtgttgcaaagatg 425
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atatatatataaataaaagtggaggctgaatggttctaaacactaagtgttgcaaagatg 631
Query: 426 ataactggttggacatgaacaacatagtattgtgtagatatagcaacacagcacactatt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ataactggttggacatgaacaacatagtattgtgtagatatagcaacacagcacactatt 691
Query: 486 ggtgaattaatagatattgtctccatgtgcccattgcttgctcatattatgcttgataac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggtgaattaatagatattgtctccatgtgcccattgcttgctcatattatgcttgataac 751
Query: 546 tacagtcaaaatgtgagttaaaatcttttgattctgtcttcaaatgttcccacattgatg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tacagtcaaaatgtgagttaaaatcttttgattctgtcttcaaatgttcccacattgatg 811
Query: 606 aaccatatctacatacacagtaagccaaaatatgccctccttcccttaaattgatcttat 665
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 812 aaccatatctacatacacagtaagccaaaataagccctccttcccttaaattgatcttat 871
Query: 666 taggtat 672
|||||||
Sbjct: 872 taggtat 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1078
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1068
Effective search space: 707016
Effective search space used: 707016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_p14.g1 MSMg01no153_p14.g1 CHROMAT_FILE:
MSMg01no153_p14.g1 PHD_FILE: MSMg01no153_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:29 2005
(506 letters)
>mm_chr3_24449139_24450045
Length = 907
Score = 692 bits (358), Expect = 0.0
Identities = 379/386 (98%), Gaps = 1/386 (0%)
Strand = Plus / Minus
Query: 1 caatgcttttcctgaatac-catctaagagacatatgggaacacagatcctctgcacagc 59
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caatacttttcctgaatacacatctaagagacatatgggaacacagatcctctgcacagc 329
Query: 60 ttgtctggctttcactgttgcttaagcattcctggcagtataatgggcaggtgatagata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgtctggctttcactgttgcttaagcattcctggcagtataatgggcaggtgatagata 269
Query: 120 atgctctccattatattgcccaatataaaatttctatattgcatcgagttaaatttgttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgctctccattatattgcccaatataaaatttctatattgcatcgagttaaatttgttt 209
Query: 180 tataaagaactattgcatacactagcaagattttgctgaaaggacccagatatagctgtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tataaagaactattgcatacactagcaagattttgctgaaaggacccagatatagctgtc 149
Query: 240 tcttgtgagactatgtagggacctagcaaacacagaagtggatgatcacagtcagctatt 299
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cctcgtgagactatgtcgggacctagcaaacacagaagtggatgatcacagtcagctatt 89
Query: 300 ggatgggtcacacggcccccaatggaggagctagagaaattacccaaggagctaaaggga 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ggatgggtcacatggcccccaatggaggagctagagaaattacccaaggagctaaaggga 29
Query: 360 actgcaatcctataggtggaacaaca 385
|||||||||||||||||||| |||||
Sbjct: 28 actgcaatcctataggtggatcaaca 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
