Query= MSMg01no154_m07.b1 MSMg01no154_m07.b1 CHROMAT_FILE:
MSMg01no154_m07.b1 PHD_FILE: MSMg01no154_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:29 2005
(529 letters)
>mm_chr3_99058920_99059847
Length = 928
Score = 980 bits (507), Expect = 0.0
Identities = 519/523 (99%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 5 gaattctccgtgttcctcgcggcccgttacggaatttgggtttagtgctggggaattatt 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccgtgtt-cttgcggcccgttacggaatttgggtttagtgctggggaattatt 263
Query: 65 tttattagtcgatgaaaagaaaattaaaaggagatttatttcatccatccacgactttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttattagtcgatgaaaagaaaattaaaaggagatttatttcatccatccacgactttct 323
Query: 125 ctctttgggagcaagggcaggtccactcggtctgctgtgtgggcaatccaggaaggaacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctttgggagcaagggcaggtccactcggtctgctgtgtgggcaatccaggaaggaacc 383
Query: 185 gaagatagctaatatgtgtcctctattctgccatcccgtcacccaatttatctgttgtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaagatagctaatatgtgtcctctattctgccatcccgtcacccaatttatctgttgtca 443
Query: 245 ggatttcagtaagggtctgtacagttattggaatgacttatggcaactttcgatttggga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggatttcagtaagggtctgtacagttattggaatgacttatggcaactttcgatttggga 503
Query: 305 atctcttgttattttatcttcctgacagtggataagggagaaattattcgatttaggaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atctcttgttattttatcttcctgacagtggataagggagaaattattcgatttaggaag 563
Query: 365 actgatgtcaagggtgcttttctctgggggaagagtctgggttgctgggagtgtgtctgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actgatgtcaagggtgcttttctctgggggaagagtctgggttgctgggagtgtgtctgg 623
Query: 425 tgtgtctaagctcaaaagggccagcatgtaggggtctctgaaaccattggtatagttcaa 484
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 624 tgtgtctaagctcaaaagggccggcatgtgggggtctctgaaaccattggtatagttcaa 683
Query: 485 agctctctccttccgtctttctcacccataagtgagggaagca 527
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agctctctccttccgtctttctcacccataagtgagggaagca 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_m07.g1 MSMg01no154_m07.g1 CHROMAT_FILE:
MSMg01no154_m07.g1 PHD_FILE: MSMg01no154_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:29 2005
(564 letters)
>mm_chr3_99227498_99228461
Length = 964
Score = 1083 bits (560), Expect = 0.0
Identities = 563/564 (99%)
Strand = Plus / Minus
Query: 1 cctttctacttaagagtgtgaaggcaattttgaggagatgctgaggtaccagatgaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cctttctacttaagagtgtgaaggcaattttgaggagatgctgaggtaccagatgaaaca 600
Query: 61 tagccttgttaggaatctgcaagcattgatacagcctctactaaaagtgcctttgggggc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tggccttgttaggaatctgcaagcattgatacagcctctactaaaagtgcctttgggggc 540
Query: 121 actgagagaggtactgagtgcttgtcagtgggctctctgcctgtggggtttgtatatagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 actgagagaggtactgagtgcttgtcagtgggctctctgcctgtggggtttgtatatagc 480
Query: 181 tcactcagtcacaaaactattgtgtttcagacaagtttctgaaaatcatttctgtttgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcactcagtcacaaaactattgtgtttcagacaagtttctgaaaatcatttctgtttgtc 420
Query: 241 gctcccatggctttagtctgtgcatttcccccacagagaagtaattgatcaatgtcagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gctcccatggctttagtctgtgcatttcccccacagagaagtaattgatcaatgtcagac 360
Query: 301 acagggagggttgaagccgagttcccaaaattgacacacattttaatgtgtacaatatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acagggagggttgaagccgagttcccaaaattgacacacattttaatgtgtacaatatgt 300
Query: 361 gtacttctaagcaataaaatgactttgttgaaggttgaatttggaagagatgtgcaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtacttctaagcaataaaatgactttgttgaaggttgaatttggaagagatgtgcaaatt 240
Query: 421 cacagctatatgttggcctcagggtatgagagattcatacatggattttaggaatcaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cacagctatatgttggcctcagggtatgagagattcatacatggattttaggaatcaaac 180
Query: 481 acattaggttaaatctaggtctgtgtcttaccagctatgttaccttggaaaaatcactat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acattaggttaaatctaggtctgtgtcttaccagctatgttaccttggaaaaatcactat 120
Query: 541 ctctaagctttatttccttcagct 564
||||||||||||||||||||||||
Sbjct: 119 ctctaagctttatttccttcagct 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
