BAC Information

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BAC

Clone NameMSMg01-154M11
Chromosome3 (Build37)
Map Location 116,630,239 - 116,630,746
singlet/doubletsinglet
Overlap genePalmd
Upstream geneDph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1
Downstream geneEG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154M11.T7 (MSMg01no154_m11.b1)MSMg01-154M11.TJ (MSMg01no154_m11.g1)
ACCAG355976AG355977
length690696
length of high quality
(start - end)
508 (65 - 572)498 (73 - 570)
definitionCHROMAT_FILE: MSMg01no154_m11.b1 PHD_FILE: MSMg01no154_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:30 2005CHROMAT_FILE: MSMg01no154_m11.g1 PHD_FILE: MSMg01no154_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGATTCA
AAACACATGCAAGAATTTATAATGGTGAAACAAGGCCAGTGATTTTATGA
AAATTACCTTGTTTCGACCTGAAACAGGCTGCTTAAAAACATACCTTCTG
GGTTTTCTTCCTTTTCCACCTTCACGGACTGTAAGATAAAAGATTTCCAG
GGTGAGCTTAGTTTAAGAAAGTCAAAATACACATCTAGAACTACTTCGAA
GAATTTTGAAGTGTAGTGTTTGCGGACTCTTCTGAGGGAATCATAGTTTG
AAGCTGAGTTACACTCACTCTTATTATGTCTTCTGTGGTCTTCTCGATCG
ACTTTAGCTTCTTCAGAATTGCCTCTTCGTTGGCTGAGATTTGCAGTTCA
GCCTTTTCAAGATCTTGGATCTCTTTCTCAAGCCTGACATTAAAAAAAGA
TATAGTTTGTAAATGTGGTACATGCAGGGTCTCAGATGCATCTTTCTCAG
ATGCAGACTCAGTTGAGACATCTTCAAGCACGTGGCATTGTCTGAGCATC
GCAGTCTCACATCTCGTACCACACCTAATGCACAGAAGGTTTCCAACGCT
TGACCAGTTTTTAATCCAAGTCTTATTACTTTTATTTAGTTTTACATAGA
GACTTCTCAGATAAAAAGGTTAATTTTGATGGCCCATTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAACTCACTTAAAGAGATACAGGAGAA
CACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTA
AAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTA
GAAGTCCTTAAAGAAACACAGGAAAACACATCCAAACAGGTGATGGAAAT
GAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACATTAAGAAAAC
CCAAAGTGAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAA
CCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATC
TCAGGTGCAGAAGACACCATAGAGAACATCGGCACAACAATCAAAGAAAA
TGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACA
CAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGAT
TTTCAACTCAAAGGACGAGCCAACATCTTCAACAAAATTATTGAAGAAAA
CTTCCCAAATCTAAAGAAAGAGATACCTATGAACATACAAGAAGCCTACA
GAAATCCAAATAGACTGGACCAGAAAAGAATTTCTTCCCTACACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_m11.b1 MSMg01no154_m11.b1 CHROMAT_FILE:
MSMg01no154_m11.b1 PHD_FILE: MSMg01no154_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:30 2005
         (508 letters)



>mm_chr3_116630039_116630946
          Length = 908

 Score =  967 bits (500), Expect = 0.0
 Identities = 506/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttataatggtgaaacaaggccagtgattttatgaaaattaccttgtttcgacctgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 atttataatggtgaaacaaggccagtgattttatgaaaattacctcgcttcgacctgaaa 260

                                                                       
Query: 61  caggctgcttaaaaacataccttctgggttttcttccttttccaccttcacggactgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggctgcttaaaaacataccttctgggttttcttccttttccaccttcacggactgtaa 320

                                                                       
Query: 121 gataaaagatttccagggtgagcttagtttaagaaagtcaaaatacacatctagaactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataaaagatttccagggtgagcttagtttaagaaagtcaaaatacacatctagaactac 380

                                                                       
Query: 181 ttcgaagaattttgaagtgtagtgtttgcggactcttctgagggaatcatagtttgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcgaagaattttgaagtgtagtgtttgcggactcttctgagggaatcatagtttgaagc 440

                                                                       
Query: 241 tgagttacactcactcttattatgtcttctgtggtcttctcgatcgactttagcttcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagttacactcactcttattatgtcttctgtggtcttctcgatcgactttagcttcttc 500

                                                                       
Query: 301 agaattgcctcttcgttggctgagatttgcagttcagccttttcaagatcttggatctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaattgcctcttcgttggctgagatttgcagttcagccttttcaagatcttggatctct 560

                                                                       
Query: 361 ttctcaagcctgacattaaaaaaagatatagtttgtaaatgtggtacatgcagggtctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctcaagcctgacattaaaaaaagatatagtttgtaaatgtggtacatgcagggtctca 620

                                                                       
Query: 421 gatgcatctttctcagatgcagactcagttgagacatcttcaagcacgtggcattgtctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgcatctttctcagatgcagactcagttgagacatcttcaagcacgtggcattgtctg 680

                                       
Query: 481 agcatcgcagtctcacatctcgtaccac 508
           ||||||||||||||||||||||||||||
Sbjct: 681 agcatcgcagtctcacatctcgtaccac 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)