BAC Information

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BAC

Clone NameMSMg01-155J14
Chromosome3 (Build37)
Map Location 137,464,481 - 137,464,817
singlet/doubletsinglet
Overlap genenone
Upstream genePpp3ca, LOC668870, LOC100039447, Emcn, EG229862, Ddit4l, LOC668874
Downstream geneH2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155J14.T7 (MSMg01no155_j14.b1)MSMg01-155J14.TJ (MSMg01no155_j14.g1)
ACCAG356563AG356564
length743766
length of high quality
(start - end)
279 (78 - 356)336 (77 - 412)
definitionCHROMAT_FILE: MSMg01no155_j14.b1 PHD_FILE: MSMg01no155_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:32 2005CHROMAT_FILE: MSMg01no155_j14.g1 PHD_FILE: MSMg01no155_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCTTTGCAGACATTTAGATAGTATATGCCCATCATGAAATAAAT
GCTATAGCTGTTATGGGGTCAATAACTACGTTCTGGTCAGAGTTGAGGAC
CACTGGACAGGAAAGGATTCACATCTGGTACTGTAAACCTGGGCATAAAC
CTATGGCTAACAGGCCACAGGCCTGATTGGAGAAGCTACTCTGCTGTTTT
ACTAAATGGACACAATGAACTTGCCTTTAAATATTTGTTTATATCCCATG
ATTAACATGCTGTCATCTTTGAAGAGAGAGATGCTCTTTGCAATGTGTGG
TGATGACTGCTTACTCTTTTGGAGGCCAGAGGCCTGCTTCAAGAAAGGGT
TTCTCTGTATAGCTCCGGCTGTCCTGGAACTCACTTTGTAGACCACGCTA
GGCCAGAACTCTTAAATCCACCTGCCTCTGCCTCCCAAGTGATGGGATTA
ACACTGCACACTTATACCGCGCCCAAATACTGAGTCTACCTGACTGAGAC
AGGCCCACCTCTTAACGGCACCTCGTTATCGTCCCTGTAAAGCCCAGTGA
GTATGGCCACAAGGAATAGCCGCACAGCCTGCACCCTGTGACATGACTTC
CCCTCTGCAGCTCCCCCTTTGCTGTTGTCCTGATCCCCCCTTACCCGTCC
CTCCTTCGAGCCGCCCCCCCTCCCCTTGTTCAATCCTCCCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCTAAGAACACCTTAAACAA
CGTAGTGTCAGAAGCCTCCTAAACCAGACTCTGGCTACTGATAAGATACA
AGGGTGTGGCTCCTAAGAAGCCCCACCCACAGCACCTGCACTGGGTGCCC
CCTTCCTTAGGCACTCTCTCCTTTAATGCCAGTCATTAAATCTGCATTAA
AGGTGTTGCCTCAGAAACTCTAACTTTGCTTTCTACTGACCAGCCTGCAA
TTTCTGTGCTGCAGTCAGGTCGTCTCTGAAACGACTCAGCACCCCCAATG
AGCAGTTGCTGCTCTGCCTACCATGACAAAGGGCGTCACGCCCGCTCATC
CCGGGCTTGTGCAATGCCCTCAGAACTCGGTCAGGGGCTCTGTGCACACA
CAGGGACCTTGATTCCCTTGCCTTGTAGTCTTGAAGTTAAGCCACTGTTG
TAACTCAACAGTCCCCTCAGCGGGGTACATAACAAGGCGCCAGGAAGGAA
TCCTCCTTTGAAAATGGTGCCTGTCGAACTGCACATAGGATATGGCGACA
GGTTTGCAAGGCATGGCCCCTGTCCTACTTTCCCGCCCACCCTATCCCGA
TATGGCGCTTTCCCCTATGAAATGGGAACACGGCAATTCCCCGAACGCCT
TTCTACCCGTTTTCCCCTTGTTCTTTTATCGTAACACCCCCCACCATTCT
TTGTACTTTTCATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_j14.g1 MSMg01no155_j14.g1 CHROMAT_FILE:
MSMg01no155_j14.g1 PHD_FILE: MSMg01no155_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:32 2005
         (336 letters)



>mm_chr3_137464281_137465017
          Length = 737

 Score =  590 bits (305), Expect = e-173
 Identities = 329/337 (97%), Gaps = 1/337 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccctaagaacaccttaaacaacgtagtgtcagaagcctcctaaaccagactctggct 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 attccctaagaacaccttaaacaacttagtgtcagaagcctcctaaaccagactctggct 260

                                                                       
Query: 61  actgataagatacaagggtgtggctcctaagaagccccacccacagcacctgcactgggt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 actgataagatacaagggtgtggctcctgagaagccccacccacagcacctgcactgggt 320

                                                                       
Query: 121 gcccccttccttaggcactctctcctttaatgccagtcattaaatctgcattaaaggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccccttccttaggcactctctcctttaatgccagtcattaaatctgcattaaaggtgt 380

                                                                       
Query: 181 tgcctcagaaactctaactttgctttctactgac-cagcctgcaatttctgtgctgcagt 239
           ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct: 381 tgcctcagaaactctaactttgcttcctactgacgcagcctggaatttctgtgctgcagt 440

                                                                       
Query: 240 caggtcgtctctgaaacgactcagcacccccaatgagcagttgctgctctgcctaccatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtcgtctctgaaacgactcagcacccccaatgagcagttgctgctctgcctaccatg 500

                                                
Query: 300 acaaagggcgtcacgcccgctcatcccgggcttgtgc 336
           |||||||| ||||||||| |||||||| |||||||||
Sbjct: 501 acaaagggtgtcacgcccactcatcccaggcttgtgc 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 737
Length adjustment: 9
Effective length of query: 327
Effective length of database: 728
Effective search space:   238056
Effective search space used:   238056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)