BAC Information

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BAC

Clone NameMSMg01-156A08
Chromosome3 (Build37)
Map Location 65,682,023 - 65,682,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156A08.T7 (MSMg01no156_a08.b1)MSMg01-156A08.TJ (MSMg01no156_a08.g1)
ACCAG356869AG356870
length756838
length of high quality
(start - end)
319 (46 - 364)187 (58 - 244)
definitionCHROMAT_FILE: MSMg01no156_a08.b1 PHD_FILE: MSMg01no156_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:03 2005CHROMAT_FILE: MSMg01no156_a08.g1 PHD_FILE: MSMg01no156_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCACAGAATCCAGTGTGGTTCTGGGCATTGGAAGGATGGAGAAG
GAAATTTGGAAATCCTCTTTGGCAGCCTTGTGGCAATTGGCATCTGTGAC
ATCTGAGAGACAGGAACTTCTGGTCTTCTCAACACCTTTATACGTGTGTT
CTGACACCAACTCCCAAGGCTCTGAGCATTCTGGCCATCATGTGAAGAGT
TACTTCCTGAACACCAGCCATGGGCCAGACACTGCCCAAGAAAGGCAGAT
TCAATTCTCAAAGTGCTTCCTTTTGGTAAGAGGAAGAGAAATCAACATGA
AGATGAGTGCTTTGTATAAAGAGCACCGCCCACCATAGGGGACAGGCAGC
ATGAGGTAGGGGTCCCATGATACAAAAAAAAAAAAAAAAAATAAAAAGAT
CCTTAGGAAGTCCAGCCTGGGGACCTGAGAGATGGCTCTACAGTTAAGAG
ACTTGATGCTCTTGCATGGAACCAGAGTTGGGTTTTACAGTGAGTAGCTT
TCAACTGCTTTTAACTCTACACACACACACACACACACTCACTCACTTTA
GTCCTATAGAGACCAGCCATAACTCTATACACACTCACACACACTTACAC
ACATCCACACATTTTTAGCTCCTATATAAGACAAGCCTGAATACTCTTGT
TTCTTTAAATTTTTGAAAAATAATGGTTTAGTATTGGCAGGAATACTCCC
CTTCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCACAGTTTTTTGTGTTTTTATTTGGTTAAACTTTAATGGGTTC
TTTCCTCCTCTCTTTCTCTCTTTCTCTCTTTCTCTTTCTCTCTCTCTCTC
TCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTGAAGCTAGTTTTATTTT
ATTTCCTTTGGGGGGTTTTGTTGTAGTATTGGGATTTTGTTTNTCCCTCA
TCTTCCTTTCTCACATTTATATATTAATATTAAAAAAAACAAAGAAAAAG
AAAATTTTTTTATAAATATTATATATATAATCAAGCAACCGAAATTTTTT
TTTTTTTCCCCCCCCCCCCCCCCCCATATATAATTATTATTTTTTGTTTA
TATAGATCCCCCCCATAATAAAAAAAAAAAAAAATATTGTTGGGGTGGGG
TGTCATGAATTATGTGATGTTGTTGCCCTCATTTTTATGCTCTTTATGTC
TCCCCCTTTTATATTATAACCCCTTTTTTAATTTTATTTTTTCTCTGTTT
GCGAAGCTCCTTTTGGCTTATCATTTAAAAAGTTGATCTTTATATTTTTA
TTGTTAGTGTGGAAATATTTAATTCGTTTTTTTTTGTTTCTTTTCAAGAG
TAATTAGTAATTGTTCTTTACCATGCTCACACTCTTGTTCCTAACTCAAC
ACATACACAGCACCCATATAATATTTATCCTATACTGTTCTTGTAGCCTG
CCCTAATGTACGCTACCTGACTGTTTCTGAATCTACAACAAGTTTACGAG
GTGTTTGGTAGTCATGGTGCCTAATTTCTAAATTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_a08.b1 MSMg01no156_a08.b1 CHROMAT_FILE:
MSMg01no156_a08.b1 PHD_FILE: MSMg01no156_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:03 2005
         (319 letters)



>mm_chr3_65681819_65682537
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccacagaatccagtgtggttctgggcattggaaggatggagaaggaaatttgg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccacagaatcctgtgtggttctgggcattggaaggatggagaaggaaatttgg 264

                                                                       
Query: 65  aaatcctctttggcagccttgtggcaattggcatctgtgacatctgagagacaggaactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatcctctttggcagccttgtggcaattggcatctgtgacatctgagagacaggaactt 324

                                                                       
Query: 125 ctggtcttctcaacacctttatacgtgtgttctgacaccaactcccaaggctctgagcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggtcttctcaacacctttatacgtgtgttctgacaccaactcccaaggctctgagcat 384

                                                                       
Query: 185 tctggccatcatgtgaagagttacttcctgaacaccagccatgggccagacactgcccaa 244
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctggccatcgtgtgaagaggtacttcctgaacaccagccatgggccagacactgcccaa 444

                                                                       
Query: 245 gaaaggcagattcaattctcaaagtgcttccttttggtaagaggaagagaaatcaacatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaaggcagattcaattctcaaagtgcttccttttggtaagaggaagagaaatcaacatg 504

                          
Query: 305 aagatgagtgctttg 319
           |||||||||||||||
Sbjct: 505 aagatgagtgctttg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)