Query= MSMg01no156_b03.b1 MSMg01no156_b03.b1 CHROMAT_FILE:
MSMg01no156_b03.b1 PHD_FILE: MSMg01no156_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:06 2005
(661 letters)
>mm_chr3_112885783_112886843
Length = 1061
Score = 1263 bits (653), Expect = 0.0
Identities = 656/657 (99%)
Strand = Plus / Plus
Query: 5 gaattcttcattttgagttgaacacaaaaataaaacctactttcaataaagaaataaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcattttgagttgaacacaaaaataaaacctactttcaataaagaaataaaag 264
Query: 65 ttgtatatattttttacaaagatacttcttaatagtaatatacatattattacattatta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtatatattttttacaaagatacttcttaatagtaatatacatattattacattatta 324
Query: 125 attatatattataatactatattattaatactaatgtatatattactgttaagtagtatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attatatattataatactatattattaatactaatgtatatattactgttaagtagtatc 384
Query: 185 tttgttaaagaaatttcccagcatattactgttatatttagaggaggacacccatattaa 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgttaaagaattttcccagcatattactgttatatttagaggaggacacccatattaa 444
Query: 245 ataattgtatcactatatgaattataatggcacaaattaagatttagttcatcaaactaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataattgtatcactatatgaattataatggcacaaattaagatttagttcatcaaactaa 504
Query: 305 gtccagaccaatatttaacatttattattgtcatggtttctatgtgacacgtcaatcaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtccagaccaatatttaacatttattattgtcatggtttctatgtgacacgtcaatcaca 564
Query: 365 gattcatatactacctgatgagcattgggtaaatgcttagtcatggtagggatagtatga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gattcatatactacctgatgagcattgggtaaatgcttagtcatggtagggatagtatga 624
Query: 425 catggttcctgcccgtagaatggagccaacagggtgtgcacctccagtggtgttgatggg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catggttcctgcccgtagaatggagccaacagggtgtgcacctccagtggtgttgatggg 684
Query: 485 tgctgtgagagtaaaatgtgtatgatagtgtacagattttcatgttccttctttgagaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgctgtgagagtaaaatgtgtatgatagtgtacagattttcatgttccttctttgagaaa 744
Query: 545 tgtcctctctgccaacgttaatgactccatggtaatcacagtaagcatgagtctgggaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtcctctctgccaacgttaatgactccatggtaatcacagtaagcatgagtctgggaca 804
Query: 605 ggcaagggtatgtctaaaatctcagcaaaatagcagaatgctgtgacctgaggacag 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggcaagggtatgtctaaaatctcagcaaaatagcagaatgctgtgacctgaggacag 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_b03.g1 MSMg01no156_b03.g1 CHROMAT_FILE:
MSMg01no156_b03.g1 PHD_FILE: MSMg01no156_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:06 2005
(534 letters)
>mm_chr3_112976293_112977219
Length = 927
Score = 920 bits (476), Expect = 0.0
Identities = 517/534 (96%), Gaps = 7/534 (1%)
Strand = Plus / Minus
Query: 1 tttatcttgcatttgttatgataaaaaaggacctaagtgcccctctatttatgtgactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tttatcttgcatttgttatgataaaaaaggacctaagtgcccctctatttatgtgactaa 668
Query: 61 tgctacattatgtttacatttgcatgtgctctctgtacctcagagaccacttcatgtgtg 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 667 tgctacattatgtttacatttgcatgtgctctctgtacctcaaagaccacttcatgtgta 608
Query: 121 tgtgtgtgagtattgatgtaatttaagtacaagttcatatatacattacttagaaattct 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 607 tgtgtgtgagtattgatgtaatttaagtacaagttcatatatacattaattagaaattct 548
Query: 181 accctgaacaacatatctattcctattttaatttgaaatctcatatttaattaccacaat 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 actctgaacaacatatctattcctattttaatttgaaatctcatatttaattaccacaat 488
Query: 241 tctatagattaaagggaaataatacttatgcagcaatacaggaaagtgaatagtagaacc 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 487 tctatagattaaagggaaataatacttatgcagcaatacaggaaagtgtatagtagaacc 428
Query: 301 tttatatttatattaggaataacttgctcaagtaatattcttctggaaaagctactccag 360
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 427 tttatatt------aggaataacttcctcaagtaatattcttctggaaaagctactccag 374
Query: 361 gaaaaaacaatagatttattcttctgtagttctgttttattattaatgccaaagaccttg 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 373 gaaaaaacaatagatttattcttctgtagttctgttttattattaatgtcaaagaccttg 314
Query: 421 gacattaatgtttaggttttccttagaagacaaaaaaattcttgggaatataaaaactag 480
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 313 gacattaatgtttaggttttccttagaagacaaaaaagt-cttgggaatataaaaactag 255
Query: 481 aattgatgaagctaggagggaaatattgggaaatagtggaggattattgaggtg 534
||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 254 aattgatgaagctaggagggaaataatggggaatagtggaggattattgaggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 927
Length adjustment: 10
Effective length of query: 524
Effective length of database: 917
Effective search space: 480508
Effective search space used: 480508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
