BAC Information

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BAC

Clone NameMSMg01-156C10
Chromosome3 (Build37)
Map Location 149,566,525 - 149,566,771
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn2, LOC100040368, LOC668893, EG381483, LOC100040620
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156C10.T7 (MSMg01no156_c10.b1)MSMg01-156C10.TJ (MSMg01no156_c10.g1)
ACCAG356964AG356965
length776822
length of high quality
(start - end)
199 (37 - 235)245 (125 - 369)
definitionCHROMAT_FILE: MSMg01no156_c10.b1 PHD_FILE: MSMg01no156_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:12 2005CHROMAT_FILE: MSMg01no156_c10.g1 PHD_FILE: MSMg01no156_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTG
TTTAGTTCTATACCTTATTTTTTGATTGCGTTGCCTGGGATTCAGAAGTT
AGCTTCTTGAGTTCTTTTTATATTTTGGATATTAGCCCTCTATCTGATGT
GGGATTAATGAAGATCTTTTTCTCAATGTGTAGGTGCTAATTTGTGTTAC
TGACTATGTCTTTTGCCTTACAGAAACTTTCCAGTTTTCTATGAGGTNCC
CATTTTATCANNATTTCTTGATCTTAGAGCATCAGCATTGGGTCAGTTAA
GAATTTCTCCGTGCTACAAGTCAAGCTCTGCCCCTTTCCCCAATATTTTT
TTTTTTTCCCCCCCCCCCCCCCGTTGGGGAGAAAAAAATATCACCTTTTG
GTATTTTTGGAGCCCTCTCTTTTTCTCCANNTAATGATTAAAAAATATTT
TTTTTTTTTTTTTTTCTTCTTTTAAAATAATCTCCCTCTCTTTTNCCTCC
CNCNNCCCNNNNNNNNNNNNNNNNNNNNTTGGGCCTTTCCAATGTGANNN
ATTNNNNNNNNNNNNNCTATTTTTTNTAAAATTATAAAAGGGGGGNNNNN
NCGGGGAGTGTTTTTTTTTTTTCCCCCCCCCCCTCTTATACCCCCCCACT
GGTTATAATAATTTTTCTCCTTTTTCCCTACTATCAAANTTTATATANAT
TCTCTTTNATTTCCCNNTTTGTTAATATTTTTATTATGGCCCCCCCTCTT
ATTTTTTCTTTCCTATTTCTCTTCTA
GTGGCGAATTTTTTNTNNATTTANCTATTTTCTTTTTTTCANNNNAATAC
TATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGATTACTCATAATAAATAGAGAAA
CAAAAAGTTAGAAAAATAAGAATGTAAAAAATGACAAAGTAATCTGGGAA
AGTAGATTTCCTAATGTTATGAAGATACTCGGTTCTATAAAGAGAAGGCA
AAATCAAGAAGCTCAGCTTTGATATCACTGAAGTGTGGCCTAAAGGGCCT
TCTGTTGGACTATTTATTCCTTAAGGTAGCACGGGTTCATTTGATACTCT
GTTGATTGGGAGTTACACTGTGTGATATTTAATGTCATTGTGTAGATTTT
TTCCCCAAAATATTTTTATTACTCCCCCCCCTCTGTAAAAGTTGATAGGA
ACTCTCTCTTGTGTTACCCTCTTAGGAATCAAAGAATTTGTCTTTAGCTC
AGCAAACTTCCCTCAGATCGCTTTCTCCTTCCCAGGTTAAGTCTGTGTCA
AAAAGACCTTGTCAGCTAGTTTTTCTACTCACTGTTTCCTCACAGAGGAC
ACCTAATAAATATTTGTGATCTGATATTGTAATTAAATACCGCATTGTTT
AGGTGTCTAAGGATTAATTTTTCCTACTGGGCAGCCTTTTTGTGTAAACT
TTGAATTTTTAGGGAATGAAATTAAAAATTTTTAAGTTGGCCTCTACTTT
GGAATCTATAAAATGACCTTTTGCCAAACTATGGATTTTTTTCTCCATTT
ATACACTCTCCCCCATTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_c10.g1 MSMg01no156_c10.g1 CHROMAT_FILE:
MSMg01no156_c10.g1 PHD_FILE: MSMg01no156_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:12 2005
         (245 letters)



>mm_chr3_149566325_149566971
          Length = 647

 Score =  412 bits (213), Expect = e-119
 Identities = 238/247 (96%), Gaps = 2/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagattactcataataaatagagaaacaaaaagttagaaaaataagaatgtaaaaaa--t 58
           |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||  |
Sbjct: 201 aagattactcataataaatagaaaaacaaaaagttaggaatataagaatgtaaaaaaaat 260

                                                                       
Query: 59  gacaaagtaatctgggaaagtagatttcctaatgttatgaagatactcggttctataaag 118
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gacaaagtaatctgggaaagtagatttcctaatgttatgaaaatactcggttctataaag 320

                                                                       
Query: 119 agaaggcaaaatcaagaagctcagctttgatatcactgaagtgtggcctaaagggccttc 178
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 321 agaaggcaaaatcaagaagctcagctttgatatcactgaagtgtggtctaaagggtcttc 380

                                                                       
Query: 179 tgttggactatttattccttaaggtagcacgggttcatttgatactctgttgattgggag 238
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tgttggactatttattccttaaggtagcatgggttcatttgatactctgttgattgggag 440

                  
Query: 239 ttacact 245
           |||||||
Sbjct: 441 ttacact 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 647
Length adjustment: 9
Effective length of query: 236
Effective length of database: 638
Effective search space:   150568
Effective search space used:   150568
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)