Query= MSMg01no156_e24.b1 MSMg01no156_e24.b1 CHROMAT_FILE:
MSMg01no156_e24.b1 PHD_FILE: MSMg01no156_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:25 2005
(328 letters)
>mm_chr3_115447893_115448621
Length = 729
Score = 557 bits (288), Expect = e-163
Identities = 306/312 (98%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 4 ggaattccaactagccaacaaaacccacagtaggacctggagagaagcctcggtggttaa 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggaattccaaccagccaacaaaacccacagtaggacctggagagaagcctcggtggttaa 584
Query: 64 gagcactggttgctattccagggagcccttggcacccacatgacatctcacagcattctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gagcactggttgctattccagggagcccttggcacccacatgacatctcacagcattctg 524
Query: 124 tggttccaaccctctcttctgatggccaagtcctgagttcagaatgttgagctgaatata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tggttccaaccctctcttctgatggccaagtcctgagttcagaatgttgagctgaatata 464
Query: 184 aaagcacctaaggtcaggaaaatattcatcttgtgtgatatggttcctcacacggtccag 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaagcacctaaggtgaggaaaatattcatcttgtgtgatatggttcctcacacggtccag 404
Query: 244 cacaagcactccgcttctcatgggaggcctgcctggt-cctgcaggccagctgcccgggg 302
||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 403 cacaagcactctgcttctcacgggaggcctgcctggggcctgcaggccagctgcccgggg 344
Query: 303 cacgcctcactc 314
||||||||||||
Sbjct: 343 cacgcctcactc 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 729
Length adjustment: 9
Effective length of query: 319
Effective length of database: 720
Effective search space: 229680
Effective search space used: 229680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_e24.g1 MSMg01no156_e24.g1 CHROMAT_FILE:
MSMg01no156_e24.g1 PHD_FILE: MSMg01no156_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:25 2005
(284 letters)
>mm_chr3_115280685_115281368
Length = 684
Score = 501 bits (259), Expect = e-146
Identities = 277/283 (97%)
Strand = Plus / Plus
Query: 1 tggctacaggaagtatgggagacacatatttgtctaattttaagccactaaatgtgttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggctacaggaagtatgggagacacatatttgtctaattttaagccactaaatgtgttat 260
Query: 61 agcagaaaaaataccagaggaatcctggactctgtaaggactagacaatcgcatgagcat 120
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 261 agcagaaaaaataccagaggaatcctggactctgtaagaactagacaatcacatgagcat 320
Query: 121 ttatgattctaaacactaagtgcaaactgataatatagtaaaatcacacacaaaatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgattctaaacactaagtgcaaactgataatatagtaaaatcacacacaaaatttat 380
Query: 181 gcctcccatgatctatccaaactcaatctgccgctccttctcactttctagacatgacat 240
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 381 gcctcccatgatctatccaaactcaatctgtcactccttctcactttctagacatgacat 440
Query: 241 ttgtggaaggtgggtgggcaagaaggagttcaataaacccaga 283
|||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 441 ttgtggaaggtgagtgggcaggaaggagttcaataaacccaga 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
