Query= MSMg01no156_f04.b1 MSMg01no156_f04.b1 CHROMAT_FILE:
MSMg01no156_f04.b1 PHD_FILE: MSMg01no156_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:25 2005
(314 letters)
>mm_chr3_50259653_50260366
Length = 714
Score = 594 bits (307), Expect = e-174
Identities = 310/311 (99%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 5 gaattctcacacaatcccactcaattcacatttattcctgatgtaatcaaataggataga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaattctcacacaatcccactcaattcacatttattcctgatgtaatcaaataggataga 321
Query: 65 caaaagcatttacagatagtatagctaacatgggatgtgagatttcgatttaactgtcgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caaaagcatttacagatagtatagctaacatgggatgtgagatttcgatttaactgtcgg 261
Query: 125 cagtttgcacatttccttgaactcgaagtgtgtgttcattatcatcatcatcattattat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagtttgcacatttccttgaactcgaagtgtgtgttcattatcatcatcatcattattat 201
Query: 185 tattagatattttcttcatttacatttccaatgctatcccaaaagtcctccataccct-c 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 200 tattagatattttcttcatttacatttccaatgctatcccaaaagtcctccataccctcc 141
Query: 244 cccccccccgactcccctaccctcccactcccacttcttggccctggcgttcccctgtac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cccccccccgactcccctaccctcccactcccacttcttggccctggcgttcccctgtac 81
Query: 304 tgaggcatatg 314
|||||||||||
Sbjct: 80 tgaggcatatg 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_f04.g1 MSMg01no156_f04.g1 CHROMAT_FILE:
MSMg01no156_f04.g1 PHD_FILE: MSMg01no156_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:25 2005
(285 letters)
>mm_chr3_50108549_50109234
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 1 tctccagctagctttc-caatgctactgactctctctgacacgttgggatctgcccacta 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccagctagctttcacaatgctactgactctctctgacacgttgggatctgcccacta 260
Query: 60 gttaaaagcctgaaggtgatgagatagtcgaagaacagtctcaagatgagctgattttcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaaaagcctgaaggtgatgagatagtcgaagaacagtctcaagatgagctgattttcc 320
Query: 120 cttacatggttggcctatacattaatttctttacccatcactatgataaaacactcaatt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 cttacatggttggcctatacattaatttctttacccatcactatgataaaactctcaatt 380
Query: 180 aagaaataaggagtgagcatttatttcagcccaggatctaaggagataagttcacataag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaataaggagtgagcatttatttcagcccaggatctaaggagataagttcacataag 440
Query: 240 agaaagcatgctgacaggtggctatacggtggccagcatataagcc 285
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaagcatgctgacaggtggctatacggtggccagcatataagcc 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space: 186852
Effective search space used: 186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
