BAC Information

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BAC

Clone NameMSMg01-156H07
Chromosome3 (Build37)
Map Location 42,180,217 - 42,180,528
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156H07.T7 (MSMg01no156_h07.b1)MSMg01-156H07.TJ (MSMg01no156_h07.g1)
ACCAG357194AG357195
length724720
length of high quality
(start - end)
317 (45 - 361)278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no156_h07.b1 PHD_FILE: MSMg01no156_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:35 2005CHROMAT_FILE: MSMg01no156_h07.g1 PHD_FILE: MSMg01no156_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTATTATGTATATGATACAAACTTTCGGAGGACAAATGTTTAACA
ATAGGTATATATGCTAACCTAACAAAAGTAAGATATATACATGTTAATAC
TAAAGAAGAATATATACATGTTAAATACCATTCACAGCTTTAAACCAATG
TTGCCATTTCAACTTTATCACAATTCTATGACCATGTGCATTTTAAAGAC
AGAAGCCAAGTCTCAGCGAGATGAAGTGACTTGACCAGGTCTCAAGAATT
AGAAGTAAAATAGGGAATATGGCTGTCCCTATTAAAGTTCATCAACAGCT
AAATAAGATGAAAAATTGAAAGGACACTTATAAGTTCTCAACTCCTCTCC
TCTACTAAGTTGCTATGTCCCCACATAATCAGTTATCAGTTGGTTACTCA
GTTGACCAAGATTAACCTTATCTGTAACACTAAGACTGCTAGCTGCCAGT
GAGGGTTTGCATAACACTTACTGAGAAAACAACTTGTAGGGACATTTCTA
CAAGATGACTAGTTTACTGTCATGTCACAGCTAGAGAAACAAACAAACAA
ACACATTCTCAAAGAAATATCCTATACTGACTGCCAGACTAAAGGGACAT
GAAGAGAAACACATGTAAAATGTGGCACAGGTGGTATTCTCTATCAAGGT
CTGCATGACGGGTAACATGTCACN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCAGGTTGATTTTTCTTTATTGC
TCCTATTTCCATTTTTGTTCTTGAGTTGTTTCCTTCACCTGTTTTTTTTT
TTAATGTCTTTCTTGATATCCTTTAAAAGATTTATTTATTTCCTCCAAAT
TTTTATTTGTCTTTTTCTAGATTTCTTTCATGGATTTATTTTTTAAGGAT
TCTACAATATTCATAAAGTTAGTTTTAAGGTCATTTACTTGTGGTTCAGC
TGTATTGGAATAGTCAGGCCTTGCTGCAATAGGATAATTGTGCTATAGTG
GTAGCATATTGCTTTGTCTATTCCGCCCCACCGCATTCTTATACTGCTGT
CTTAGCAACTGGGGTTGGCACCCCCGCAGCCCTAGCTATTTATTTCTGAG
TTTGCCTTTCTTGAATGGGAATTTCATTCCTTGAATTGTGCTTCCTCTTT
TGCCTTCCGGACTTTGCGACTGGATTTTTAGCCTTTACCTTGACCTCTTA
ACCCACTAGGGCATCTTTTTCCATTTTGGTAGCTTGACTTCTGGCACCCT
GCTTACCCTTTGTCGTAATAAATTTTCCCCGTCCTTTTGACTGGCGCGTT
TTATCCCTAATTATAATATATTTGTTGCGACCTAGGCATACTTGTCTTTC
CTTTCCACCTTTTCACCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_h07.b1 MSMg01no156_h07.b1 CHROMAT_FILE:
MSMg01no156_h07.b1 PHD_FILE: MSMg01no156_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:35 2005
         (317 letters)



>mm_chr3_42180136_42180851
          Length = 716

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%), Gaps = 1/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctattatgtatatgatacaaactttcggaggacaaatgtttaacaataggtat 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 393 gaattctctattatgtatatgatacaaacttt-ggaggacaaatgtttaacaataggtat 335

                                                                       
Query: 65  atatgctaacctaacaaaagtaagatatatacatgttaatactaaagaagaatatataca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atatgctaacctaacaaaagtaagatatatacatgttaatactaaagaagaatatataca 275

                                                                       
Query: 125 tgttaaataccattcacagctttaaaccaatgttgccatttcaactttatcacaattcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgttaaataccattcacagctttaaaccaatgttgccatttcaactttatcacaattcta 215

                                                                       
Query: 185 tgaccatgtgcattttaaagacagaagccaagtctcagcgagatgaagtgacttgaccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tgaccatgtgcattttaaagacagaagccaagtctcagcgagatgaagtgacttgaccag 155

                                                                       
Query: 245 gtctcaagaattagaagtaaaatagggaatatggctgtccctattaaagttcatcaacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gtctcaagaattagaagtaaaatagggaatatggctgtccctattaaagttcatcaacag 95

                        
Query: 305 ctaaataagatga 317
           |||||||||||||
Sbjct: 94  ctaaataagatga 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)