BAC Information

Click to search

BAC

Clone NameMSMg01-156I11
Chromosome3 (Build37)
Map Location 63,346,062 - 63,346,527
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156I11.T7 (MSMg01no156_i11.b1)MSMg01-156I11.TJ (MSMg01no156_i11.g1)
ACCAG357245AG357246
length765804
length of high quality
(start - end)
277 (37 - 313)465 (131 - 595)
definitionCHROMAT_FILE: MSMg01no156_i11.b1 PHD_FILE: MSMg01no156_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:41 2005CHROMAT_FILE: MSMg01no156_i11.g1 PHD_FILE: MSMg01no156_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
GCCCAATAAAACAAGACTCCTTAAACAAGTCTTGATACACAAACTATTTA
AGATGCAAGTGGTTTGCCCGGAGTGGTGGCTCATGCCTTTAATCCCAGCA
CTTGGGAGGCAGAGGCAGGTGGACTTCTGAATTCAAGGCCAGCCTGGTCT
ACAAAGTGAGTTACAGGACAGCCAGGTGCTATACAGAAAAACCCTGTCTT
GAAAAACAAAACAAAAACAAACAAACAAAAAAAAAACCAAAAAAAAAAAA
AAAACCAAAAACATATTTATCCAAACAAACAAAAAAAGAAGCAAGTGGTT
TTCCTTTTGTTATTTCCCCCNNTCANCCCCCTGGAGGTGTGGTAATTCTC
TAAAACAAAGGGCCCCGTTGATAAAAAACAAAATTTCTCTGGAAGGCAAA
GTTTTTCTAGAGTGAACAAAAATATCAACTTGGTTTATCTATACTCTGTA
GTTATAGATTATCTCTATTGCCACTTCCATTTTGGTAAAATCTGTTAGAT
TTTTCTAAAATATTATTGGCACTTACATATGATAATAATGAAATTGATAA
TAATCTAAGATCAATAGCCCTCTTCTTCTAACCCTTTAATGCAATTGTGG
TATAATAATCTATCTTGTCTCTTGCCTCTTTTTTTTGAACTTTCACCAAA
AATATATTTGAAACTCAGGATATATTTATATACCAAATCAGTAATATGTT
CTTTGTGATTATGCC
TTTATTAATAATAATTCATTTACCTTCCTTTTCTNTCCTATATTNNTTCT
TACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGACATTTTTATTAAAAAC
AAAACCAAGCATCATAGGAAGTGACTAGTCCAGAATTGACAGACACATTT
CCAAGAGAAATGAGGATGTGAATGAATAACAAGAAGGAGTAAACTGTTGA
TTAATTTCACTTCTAAGTGCATTTGCCCTTGACAGTTGTAATAAATATTT
TCATCTAACACAAAGTTTTTTGCTGTCTGTTTGGCTCTTAAACTGGTTCC
TCCAAATAGAATTAAGTGTTCTAGTTTTTTTCAACAAAAACATATTAATA
TTAAGCAGAAAGTTATTTTCTCTTCAGTAGCTATAAATGTTGACATGTTT
ATCATGTTTTATTTTCTGAAAGCCCGAACAGCAGATATTGTTTGAACATA
ATACTAGCAGTTTTCAAAATCCTGACTAATGCTTGTATGCATATGTGATA
TATGCACACACATATTTAAAATTCAATATTTGGAAGGAAACCACATATAT
TTTCAGAAAGTTTGAGACTCTCAGCTCTGGCTTCAGCTGAACTGAGAAAG
CGCTAGCAAGTCCTGGCTCTCTTGCCCTTGGTTGCCTTTCACAGAGACTG
GGGCCCTTGGCTTTGTAATGCTTGGTGTGTCTTTTAAATCCCCCGCTTAG
CATGATCAAGATCCTGGGAACCCCCCATATCACCTTAAATGAATGAGGGA
AACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_i11.g1 MSMg01no156_i11.g1 CHROMAT_FILE:
MSMg01no156_i11.g1 PHD_FILE: MSMg01no156_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:41 2005
         (465 letters)



>mm_chr3_63345862_63346727
          Length = 866

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%), Gaps = 1/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagacatttttattaaaaacaaaaccaagcatcataggaagtgactagtccagaattgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 666 tagacatttttattaaaaacaaaaccaagcatcataggaagtgactagttcagaattgac 607

                                                                       
Query: 61  agacacatttccaagagaaatgaggatgtgaatgaataacaagaaggagtaaactgttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agacacatttccaagagaaatgaggatgtgaatgaataacaagaaggagtaaactgttga 547

                                                                       
Query: 121 ttaatttcacttctaagtgcatttgcccttgacagttgtaataaatattttcatctaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttaatttcacttctaagtgcatttgcccttgacagttgtaataaatattttcatctaaca 487

                                                                       
Query: 181 caaagttttttgctgtctgtttggctcttaaactggttcctccaaatagaattaagtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caaagttttttgctgtctgtttggctcttaaactggttcctccaaatagaattaagtgtt 427

                                                                       
Query: 241 ctagtttttttcaacaaaaacatattaatattaagcagaaagttattttctcttcagtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctagtttttttcaacaaaaacatattaatattaagcagaaagttattttctcttcagtag 367

                                                                       
Query: 301 ctataaatgttgacat-gtttatcatgttttattttctgaaagcccgaacagcagatatt 359
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 366 ctataaatgttgacatcgtttatcatgttttattttctgaaagcctgaacagcagatatt 307

                                                                       
Query: 360 gtttgaacataatactagcagttttcaaaatcctgactaatgcttgtatgcatatgtgat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtttgaacataatactagcagttttcaaaatcctgactaatgcttgtatgcatatgtgat 247

                                                         
Query: 420 atatgcacacacatatttaaaattcaatatttggaaggaaaccaca 465
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atatgcacacacatatttaaaattcaatatttggaaggaaaccaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 866
Length adjustment: 10
Effective length of query: 455
Effective length of database: 856
Effective search space:   389480
Effective search space used:   389480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)