BAC Information

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BAC

Clone NameMSMg01-156I12
Chromosome3 (Build37)
Map Location 131,978,628 - 131,978,940
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1, Dkk2
Downstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156I12.T7 (MSMg01no156_i12.b1)MSMg01-156I12.TJ (MSMg01no156_i12.g1)
ACCAG357247AG357248
length746843
length of high quality
(start - end)
329 (8 - 336)36 (127 - 162)
definitionCHROMAT_FILE: MSMg01no156_i12.b1 PHD_FILE: MSMg01no156_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:41 2005CHROMAT_FILE: MSMg01no156_i12.g1 PHD_FILE: MSMg01no156_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTGGGAGAGGATCCGCGGAATTCACTCTGTAGACCAGGCTGGCCTC
AAACTCAGAAATTCGCCTGCCTCTGCGTCCCAAGTGCTGGGATTAAAGGT
GTGCACCCTCATGCCCAGCCTCTGTTAAAGTATTTTTATTGAAGTCTTTA
GGTGTTTTAAACAACCTCCCTAAGGAGTTTCGTAGAGTGAAGTTCCTTGA
GAATTTAAAATATTCCATTTGTTTTAAACACATTTAGATGCTTAAGTTCT
GTAGGTGTGCTTGTTAATAAAGATTATTAACTTGACAGAATCTAGAATCT
CTTAAGACACAAATGTGCATACGTGCCTTCAGGTTTATTATTTGCACCAC
ACCACGTGGAAAGGCCAACTCTGAATGTGGGCATCATAACGCCCTGGGCC
TGAGACCTTGGAAGCTGAAAACCTGTTTAGCACAACCAACCCACATCCTC
TGATTCTTGTCTGTTGATATACCATGACCAGCATCCTCTAGGTACTGCCA
CTTGTATTTCCCTACCATGTTGGGTATTTGTCTTATCTGTGAGACAGGTT
GTATTTTATTATTGTATCTTATCACACCATATGTAATTAGATCCTAGATC
CTCGGGTATTAACTTTTGTAATATAATAAGATTTTGTTTTTACTTTTCTG
TTCACATTGTTTTAATATGATTTCATATTATGTCTCGCATTGACTAATCT
TTTCCTGGTTGTGGAGTTAGTCCTAATTTTTTATATTCTTGTCCTT
NTTTTTTTTTTCTTTTTTTTTTATTTTTTCTTTNNNAGGCANNNNNCCAA
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTTCATTTGGATTCTCAAAAGT
CCACTTAGGAAACTGTAAAGGGAACGAAAAATCCATCTAATGCCGGCATA
AAACATTGGAACTGGGGGCGCATTGAAAAATCGCCTCACAGGGACGGGAG
GGTTTTCCCAGGGCTCTTCTTTCAAGGGTAAATAAAACATGGTAAGGAGG
TTAAAATCTATTTGCCCCCAGAATCACACATTAACTTTATCTCACCTTCT
TCTTTCTAGATGAAAAGAATGAAACTTACCTGGCAAACATGTGGTAAAGT
GGAAAGAGAGATATTGTGTTTTACCCCCCCCCCCCGACATTTAGAGACTC
AAAGTGACATATACTCCCCCCGCCCAAAAAAAAAAAAAAAAAAGTACGCC
GGAACCAAAGGTAAAAATAGTACTGATACCCTAAGACAGACACAAAGAGA
ACCTGATAACCCGATAACAAGAGTGACTAAGAACCATAAGGAGAACATAA
TGATATTTTTAAAGAGGGCCTAGATAGAGGCATTGTAAACATCCCCGAAT
TAAATGTAATAAAATTCTTAAACCATTTGTGGGTGGTTCAGGAACATCAT
AAGGTTATTTTCCATAATGGAATGATTCCCCATCTACGCTATATTTTTAA
ACCAACCTTATCAATACAAAACCAAGTATTAATTATTTAAACACATTTAA
TTGGCAACCATTTACATAAATTAAAGTTCCCAAAAGACAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_i12.b1 MSMg01no156_i12.b1 CHROMAT_FILE:
MSMg01no156_i12.b1 PHD_FILE: MSMg01no156_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:41 2005
         (329 letters)



>mm_chr3_131978394_131979122
          Length = 729

 Score =  605 bits (313), Expect = e-177
 Identities = 313/313 (100%)
 Strand = Plus / Minus

                                                                       
Query: 14  ggaattcactctgtagaccaggctggcctcaaactcagaaattcgcctgcctctgcgtcc 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggaattcactctgtagaccaggctggcctcaaactcagaaattcgcctgcctctgcgtcc 488

                                                                       
Query: 74  caagtgctgggattaaaggtgtgcaccctcatgcccagcctctgttaaagtatttttatt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caagtgctgggattaaaggtgtgcaccctcatgcccagcctctgttaaagtatttttatt 428

                                                                       
Query: 134 gaagtctttaggtgttttaaacaacctccctaaggagtttcgtagagtgaagttccttga 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaagtctttaggtgttttaaacaacctccctaaggagtttcgtagagtgaagttccttga 368

                                                                       
Query: 194 gaatttaaaatattccatttgttttaaacacatttagatgcttaagttctgtaggtgtgc 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaatttaaaatattccatttgttttaaacacatttagatgcttaagttctgtaggtgtgc 308

                                                                       
Query: 254 ttgttaataaagattattaacttgacagaatctagaatctcttaagacacaaatgtgcat 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttgttaataaagattattaacttgacagaatctagaatctcttaagacacaaatgtgcat 248

                        
Query: 314 acgtgccttcagg 326
           |||||||||||||
Sbjct: 247 acgtgccttcagg 235


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)