BAC Information

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BAC

Clone NameMSMg01-156K03
Chromosome3 (Build37)
Map Location 147,527,052 - 147,685,313
singlet/doubletdoublet
Overlap genenone
Upstream geneTtll7, Ppia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156K03.T7 (MSMg01no156_k03.b1)MSMg01-156K03.TJ (MSMg01no156_k03.g1)
ACCAG357323AG357324
length890819
length of high quality
(start - end)		182 (61 - 242)300 (76 - 375)
definitionCHROMAT_FILE: MSMg01no156_k03.b1 PHD_FILE: MSMg01no156_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:48 2005CHROMAT_FILE: MSMg01no156_k03.g1 PHD_FILE: MSMg01no156_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,527,052 - 147,527,233)(147,685,014 - 147,685,313)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXGACACCTCTGAAGGCAGTGTTTAAGATTTTCTATTGTTTG
ATGAAAATCACATTCATGGTACTTTGCATCATATTTTAAAGTGCATAATT
ATCAAATAGATGGGTAGTTATATAGGGGATGATTGGGGAAATACAACAAA
AAATAAACTACCTTCCTGGGCTTTTGTTTCCTTTTCTTTAGTCATACAGT
GTTTATAATATAGTCAAGTGGAGGGAAATTTTCTAATTTGTGGATGAAGA
TTCCGAGCTGTGCCAATACAGTTTTATTACTGCTTTGATCCAATATGTTT
TGACACATATACTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAATTATA
GTATAGTTAATGTTATCAGAGCGGACACCCACCAGCAAAACAACAAAAAA
TACTGTCTGTGAATGTTCAATATTTCCTATTTCGTTACATGACTCAACGA
ACATATTCTTATAAACCTAAATAAACTCTTATCATGAATATCTATGTATA
TCTAGATTACAATATATAGCACACATATTCTCGTGCTAACAGGCCTTAAT
CATATTTATTATTAATACCTCTATATTTATCTCCTCTCCTATACATTCAT
AATAGCATATTCCATATAATTGATCCACTATTTAACGACTATTCATCTTC
TATTTTATCGTCACAATTGGTTATATATCCTATTATTCTTACTATACTTT
GTTCTCACTGCGTACACTTATACTCTCTAAAGCTAAGAACAACGCACTCT
ATCATTCTCCACTTCTTCAAATGATTCATACTCGAGTTCTATTTATTCTT
CGTTGAACTTCCGCTTCTTTAAAATATACTATTTTGTACA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAAATTGTTGAAAGAATGAGC
AAGGAAGGGCTTACACGGATGTCCAGAGGATAAAGGTGCTTTGCTGGGCT
TGACTACTAGAGTTAGTCTTCAAGAACAGACTTGTGCATGTAGGTCTCTT
GATTTCAGTAAGTTTTCTATAACACACACGTACACACAACATAAACATAA
TCAAGTAGTGAGTGTGATGTGCAAATTATTGTTTCCACAAAAGCATTGTA
GTTAAATGCAGTGTAGGTGTTTACTTTTGAACATTCTTCATTGCCAATCT
TGGCAGCTTCTCTTCCTCCTCCTCCTTATTTATTTGTTCATATGATTTTA
TTTCATATTTATATTCCCCCCTATTTGTTTTCCCTCTTTCTTTTCTTTTT
TTTAATTTACTTTCTTTTTCTTCTTGGGCGACCCTCTTACACAGGAATAA
AACTCTTTTCTCTCCATACTCTTTATCTCGATTTTTACATTTTTATTATT
TATTTTTTTTCCATCTAATTTTCTCCCTCATTATTTCACTTCTCTATTCA
GGGATCGCACTTTCTCATTTTTTTTTTTTTTTTATCCTATAATCCCTTCC
CCCCATTACCAAATCATTTACTTCTATTTACTATTTACAATAATTTTATA
GTCTAAATTATTAATTTTATATGTCTTGAGTATTCTTCACATATGGATAT
ATTATCCCTATAATTAGAACTTTTTAATCTTCAAAAAAATTTCTTTATTT
CCACACTTAATTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_k03.b1 MSMg01no156_k03.b1 CHROMAT_FILE:
MSMg01no156_k03.b1 PHD_FILE: MSMg01no156_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:48 2005
         (182 letters)



>mm_chr3_147526852_147527433
          Length = 582

 Score =  337 bits (174), Expect = 3e-97
 Identities = 180/182 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacacctctgaaggcagtgtttaagattttctattgtttgatgaaaatcacattcatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gacacctctgaaggcagtgtttaagattttctattgtttgatgaaaatcacattcgtggt 260

                                                                       
Query: 61  actttgcatcatattttaaagtgcataattatcaaatagatgggtagttatataggggat 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 actttgcatcatattttaaagtgcgtaattatcaaatagatgggtagttatataggggat 320

                                                                       
Query: 121 gattggggaaatacaacaaaaaataaactaccttcctgggcttttgtttccttttcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattggggaaatacaacaaaaaataaactaccttcctgggcttttgtttccttttcttta 380

             
Query: 181 gt 182
           ||
Sbjct: 381 gt 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no156_k03.g1 MSMg01no156_k03.g1 CHROMAT_FILE:
MSMg01no156_k03.g1 PHD_FILE: MSMg01no156_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:49 2005
         (300 letters)



>mm_chr3_147684814_147685513
          Length = 700

 Score =  565 bits (292), Expect = e-165
 Identities = 298/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaaaattgttgaaagaatgagcaaggaagggcttacacggatgtccagaggataaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttaaaattgttgaaagaatgagcaaggaagggcttacacggatgtccagaggataaag 441

                                                                       
Query: 61  gtgctttgctgggcttgactactagagttagtcttcaagaacagacttgtgcatgtaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 440 gtgctttgctgggcttgactactagagttagtcttcaagaacagactcgtgcatgtaggt 381

                                                                       
Query: 121 ctcttgatttcagtaagttttctataacacacacgtacacacaacataaacataatcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcttgatttcagtaagttttctataacacacacgtacacacaacataaacataatcaag 321

                                                                       
Query: 181 tagtgagtgtgatgtgcaaattattgtttccacaaaagcattgtagttaaatgcagtgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagtgagtgtgatgtgcaaattattgtttccacaaaagcattgtagttaaatgcagtgta 261

                                                                       
Query: 241 ggtgtttacttttgaacattcttcattgccaatcttggcagcttctcttcctcctcctcc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggtgtttacatttgaacattcttcattgccaatcttggcagcttctcttcctcctcctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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