BAC Information

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BAC

Clone NameMSMg01-156N24
Chromosome3 (Build37)
Map Location 35,386,443 - 35,386,766
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156N24.T7 (MSMg01no156_n24.b1)MSMg01-156N24.TJ (MSMg01no156_n24.g1)
ACCAG357503AG357504
length712716
length of high quality
(start - end)
328 (45 - 372)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no156_n24.b1 PHD_FILE: MSMg01no156_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:06 2005CHROMAT_FILE: MSMg01no156_n24.g1 PHD_FILE: MSMg01no156_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCACTTATAGTAACCTGCAGTTGCCTGATGTGCTATTGGTATAGA
CACAATAAGTGAAATCTAGTTACCATTCCCTTGGGGGCAGGCACCCTTCC
CACCATGGGCCTGTGTCAAACAGAAAGATATATTTCAAAGCTTTGATAGA
TATAGACAGGTAGACATTCATAAGAGTTCTACCAACTCATGGTTTTACCA
ATGACTCACAAAAGTTATTTTCAGGTAATCTTGGTAACATTTTATTAAAC
TTCTGGAGTTTCCCACTGGAGAGTTTAGGAGAGGCTTCTCCACGCAGTTG
TAGTTTACACATTTCTGTCTATGACCGAAAGCGTGCATCTGCTTGTTAAG
AAGCCGACTTGTCCCTTTCCCGCGGGGGTTGCCTATCTTTGTGAATTTTT
CAATTGGATGAGTTGAACTTTTAAAAACCTATTTTTGAGTGTGTAATATG
TAATTTTTGGATATTTTACATATTTGGGAGTTTAGCACTTTGTTCAAGAC
AGGAGAAGAAAAATTGAGGCAGAGTCTCATTTCATGGCTTGGGCTGACCT
CAACCTTGACAATCCTCCTGCCTCAGCTTCCCCAGTGCTAGGATTACTGG
GCTGTACTACCACATCTGTCCTCACATTGTAATTAAGTTTTGCCTAGTTA
TTGTTTGTCTTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATTCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGCAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTACAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGTTTCATATATCCCGCACCATGCCCCAACTGGTAAG
AAGGACACATGCTCCACAATGCCCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTAAACACATGAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_n24.b1 MSMg01no156_n24.b1 CHROMAT_FILE:
MSMg01no156_n24.b1 PHD_FILE: MSMg01no156_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:06 2005
         (328 letters)



>mm_chr3_35386239_35386966
          Length = 728

 Score =  580 bits (300), Expect = e-170
 Identities = 318/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcacttatagtaacctgcagttgcctgatgtgctattggtatagacacaataa 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 528 gaattcatcacttatagtaacctgcagttgcctgatgtgctattggtagagacacaataa 469

                                                                       
Query: 65  gtgaaatctagttaccattcccttgggggcaggcacccttcccaccatgggcctgtgtca 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtgaaatctagttagcattcccttgggggcaggcacccttcccaccatgggcctgtgtca 409

                                                                       
Query: 125 aacagaaagatatatttcaaagctttgatagatatagacaggtagacattcataagagtt 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 408 aacagaaagatatatttcaaagctttgatagatatagacaggtagatattcataagagtt 349

                                                                       
Query: 185 ctaccaactcatggttttaccaatgactcacaaaagttattttcaggtaatcttggtaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctaccaactcatggttttaccaatgactcacaaaagttattttcaggtaatcttggtaac 289

                                                                       
Query: 245 attttattaaacttctggagtttcccactggagagtttaggagaggcttctccacgcagt 304
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct: 288 attttattaaacttctggagtttcccactggagagtttaggggcggcttctccacacagt 229

                                   
Query: 305 tgtagtttacacatttctgtctat 328
           ||||||||||||||||||||||||
Sbjct: 228 tgtagtttacacatttctgtctat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)