BAC Information

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BAC

Clone NameMSMg01-156P07
Chromosome3 (Build37)
Map Location 147,496,298 - 147,644,569
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354, Lphn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P07.T7 (MSMg01no156_p07.b1)MSMg01-156P07.TJ (MSMg01no156_p07.g1)
ACCAG357563AG357564
length728725
length of high quality
(start - end)
320 (46 - 365)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no156_p07.b1 PHD_FILE: MSMg01no156_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:12 2005CHROMAT_FILE: MSMg01no156_p07.g1 PHD_FILE: MSMg01no156_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,644,258 - 147,644,569)(147,496,298 - 147,496,583)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGCCCTTATAAGACGAAGGCTTTTCTCCCTCATTGTGCTGAGA
CTGAAATGCAGAAAGGTTAAGTGATTTGCTTATTTATTTATTTGTGATGC
ATTTATTCTGCCCTCGAAAGTCAGTAATGGGACTGGGAATAGGGGACAAC
ATTTCTGATTCCTTATTCTCCCTCCAGCCACTCACCTTGCTTAAAAGCTC
CTGGTAGAAGTTAGTGACATTTACTGTTGTGAGCCAGACGTCATCTTGGT
TGCGATGACATGCCTCTATTACACTTAGAAATAGTGTGAAAGGTGCAGGG
TCTGTCACTTCTTTATCTTCTGCCCCCTAGCCCAGATGGCTCCACACGTA
TTCCGTGAGTCCCCCTGGCCCCCATCACTGTGCAACAAGCACTGGGCTGA
CTGTGCAACAAGCACTGGGCTAAGGGCATTGAGCTCTCTAAGTCAATTAA
GACATCTAACAGCTTTCCAATCTGCTACAGTGATGGGAGTCTCCAGAAAA
CACTAGGAAACTGAAAAGCGATTTGGTCCAAGCATCCATCAAGCAAGGGC
TGGCGCAAAGGGGCTTAGTTAGAATAGACCCATCAGACTTCTGTGCCTCG
GATCTGTCCATCCGTGAAGGATGCTGCTTCTTTTTCCATCCCTCTGTCAC
ATCAAGATTCTAAGAGCTGGCATTGTCT
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGTGCCTGTGGGAGCATACAGATCT
CCTGGGAGACCTTTGACTCTTGGCTTTCTGGTTCCTGGGCTCTATCCTGT
TTTGCTTGTCTCTCTAGTATGTTGTGTGTACAAATGTTGTGTGTTAAGAT
CAAGGGGTGGACACCTGGTTTATGTCTCGGAGTCCCATCACTTGCCCTCA
TAAAGATTTTGCTCTGGGCATTGCAGCTGTGATTCTCTCTGTTCTTGAAA
CAACTGCTGAACAGTTACACTGTAGAGAGTAATGAAGGCTGCACACACAC
CACACCGCATTTTTTTTCACCCCACCGCACCGCACCCTGCTTCCTTTCCA
CCTTGCATCCTCCTGCCACCAAAGAAAAAACACGTGTTTCTCAAACTCGA
TTTTTGCTGATGAAAATTTTGTTCAATTTCACAGCCTGACTTCAGGATTT
TCCCAAGTGATGGTAAATTCCATTCTCTTGCCAAACAAGGAAATAATCTA
CGAGTCTTTTTGGGAGGAAAACCTCCAGGTTCCCCCTCAAGGCTCAGTAT
CCGATAAATATAATGAAAAAAAAATTGTTATGTCAGCTTCTGCTAGCCAA
GATATTACCTTGTTTAATGATTGCAAATTCTGGAAACAAATATTTAATAT
GGTTTAAGGGAACATTATTCTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p07.b1 MSMg01no156_p07.b1 CHROMAT_FILE:
MSMg01no156_p07.b1 PHD_FILE: MSMg01no156_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:12 2005
         (320 letters)



>mm_chr3_147643971_147644690
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagcccttataagacgaaggcttttctccctcattgtgctgagactgaaatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 599 gaattccaagcccttataagacgaaggcttttctccctcattgtgctgagactgaaatga 540

                                                                       
Query: 65  agaaaggttaagtgatttgcttatttatttatttgtgatgcatttattctgccctcgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agaaaggttaagtgatttgcttatttatttatttgtgatgcatttattctgccctcgaaa 480

                                                                       
Query: 125 gtcagtaatgggactgggaataggggacaacatttctgattccttattctccctccagcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtcagtaatgggactgggaataggggacaacatttctgattccttattctccctccagcc 420

                                                                       
Query: 185 actcaccttgcttaaaagctcctggtagaagttagtgacatttactgttgtgagccagac 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 419 actcaccttgcttaaaagctcctggtagaagttagtgacatttactgttgtgagcccgac 360

                                                                       
Query: 245 gtcatcttggttgcgatgacatgcctctattacacttagaaatagtgtgaaaggtgcagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gtcatcttggttgcgatgacatgcctctattacacttagaaatagtgtgaaaggtgcagg 300

                       
Query: 305 gtctgtcacttc 316
           | ||||||||||
Sbjct: 299 gactgtcacttc 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no156_p07.g1 MSMg01no156_p07.g1 CHROMAT_FILE:
MSMg01no156_p07.g1 PHD_FILE: MSMg01no156_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:12 2005
         (286 letters)



>mm_chr3_147496098_147496783
          Length = 686

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtgcctgtgggagcatacagatctcctgggagacctttgactcttggctttctggtt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtgtctgtgggagcatacagatctcctgggagacctttgactcttggctttctggtt 260

                                                                       
Query: 61  cctgggctctatcctgttttgcttgtctctctagtatgttgtgtgtacaaatgttgtgtg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cctgggctctatcctgttttgcttgtctctctagtctgttgtgtgtacaaatgttgtgtg 320

                                                                       
Query: 121 ttaagatcaaggggtggacacctggtttatgtctcggagtcccatcacttgccctcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagatcaaggggtggacacctggtttatgtctcggagtcccatcacttgccctcataa 380

                                                                       
Query: 181 agattttgctctgggcattgcagctgtgattctctctgttcttgaaacaactgctgaaca 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 agattttgctctgggcattgcagctgtgattctttctgttcttgaaacaactgctgaaca 440

                                                         
Query: 241 gttacactgtagagagtaatgaaggctgcacacacaccacaccgca 286
           ||||||| | ||||||||||||||||||||||| |||| |||||||
Sbjct: 441 gttacacagcagagagtaatgaaggctgcacacgcaccgcaccgca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)