BAC Information

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BAC

Clone NameMSMg01-157D21
Chromosome3 (Build37)
Map Location 79,954,120 - 79,954,408
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157D21.T7 (MSMg01no157_d21.b1)MSMg01-157D21.TJ (MSMg01no157_d21.g1)
ACCAG357776AG357777
length725721
length of high quality
(start - end)
344 (382 - 725)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no157_d21.b1 PHD_FILE: MSMg01no157_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:33 2005CHROMAT_FILE: MSMg01no157_d21.g1 PHD_FILE: MSMg01no157_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGCAGATCTTCAAAGAAGAATTAATTCCAGCACTCTTTGAATTATTT
CACAAAATATAAACAGAAGGACCATTGCCTAATTCTTTTGACAAGGTCAC
AATTACCATTGTACCTCTACCACATAAAGGTTGAAAAGAGAAACAGATTT
ACAGACCAATTTCTTGGTGAACATTGAAACAAAAATTCTCATTAAAATAC
TTGCAAACTAAATCTAAGAATACATGAAAAAAGATTATCTGCTATGAACA
AGTAGGCTTTATACCAGCAATTCAGGGTTTGTTCAGCCTATGTAAATCAA
TAAATGTAATCTTTTTTATACCCACCCCGAAAGAAAAAACAGCATATGAT
CAACTTACTGATGCAGAAAAGGCCTATGACAAAGTCTAACAACACTCCAC
AAAGATCTTGGAGAAAGTGGGGATACAAGGGACACACCACCATCACCACC
ACCACGACAATGGGCAATTTACAGCAAGCCACAGTAAGCATCAACCAAAA
AGAAGAGAAACTCAAAGTATTTCCATTTAAAATCAGGAACAAGATAGGGT
TGTTCACTCCCTCCATACCTATTCAATATAGTACTTGAAGTCTTAGAGCA
ATAAGACAACTGCAGGAGGAATACAAATTGGAAAGGAAGAAATATTTTTG
AAGCTAATATGATTGCATATATAAT
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGGAGGCTAACGCAGGATTA
TCTCAAGTTTGAGTTTAACCTGAGCTATTGTCTTTTTTAAAAATAAACAC
ATACATACATACCATACAGGATGTCAAGTGCTAACTGGGATGTGGTAAAA
TTGGAGTCTTTTTGCACAATTGGTGGGGATGAGCAATGGTAAATGTAGTA
GAAAGCTGTATTAGAATTGGAGGTAGATTTTGCTATGGAATGATATATAT
TTAAGTACTCTACTACAAAAAGTTTTCTACTAATACAAATTCAGATCTGA
CTCCTGAATTCTGATGCCCATCCCACCGCAATAGCGTAACTTTACTTCTA
CAGGTTTGTATAAGCATTGGGTGCTTTAAAATAATATATGGCAAGTTTGC
AGGGGTGAGAGTGTGGACTACAGAAGCTAACAGCTTCAGGGACAGGCAGG
AGGCACAGAGCTTCTGAGACAGTTCCTGTTTCAGGCTCCAGACATCCAGG
CACCTTCCCTGCCAGAGGAGAGGTGTCCACCCAGCCTGGGATGGAGTTGC
CAGAGCATCTGGGGGAGACATCTTGGTTCCTCGATTCCACCTAGACTAGT
CTGTGCAGGGGAGAGTGTGGACTACAGAAGCTAACAGCTTCTGGGACAGA
TCCTGTTTCAGGCCTTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_d21.g1 MSMg01no157_d21.g1 CHROMAT_FILE:
MSMg01no157_d21.g1 PHD_FILE: MSMg01no157_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:33 2005
         (289 letters)



>mm_chr3_79953920_79954608
          Length = 689

 Score =  439 bits (227), Expect = e-128
 Identities = 275/291 (94%), Gaps = 4/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcaggaggctaacgcaggattatctcaagtttgagtttaacctgagctattgtcttt- 59
           |||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||| 
Sbjct: 489 actcaggaggctgaggcaggatgatctcaagtttgagtttaacctgagctatagtctttc 430

                                                                       
Query: 60  tttaaaaataaacacatacatacataccatacaggatgtcaagtgctaactgggatgtgg 119
           ||||||| |||||||||||||||||| ||||||||||| ||||||||| | |||||||||
Sbjct: 429 tttaaaa-taaacacatacatacataacatacaggatgccaagtgctagcagggatgtgg 371

                                                                       
Query: 120 taaaattggagtctttttgcacaattggtggggatgagcaatggtaaatgtagtagaaag 179
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 370 aaaaattggagtctttttgcacaattgg-ggggatgagcaatggtaaatgtagtagaaag 312

                                                                       
Query: 180 ctgtattagaattggaggtagattttgctatggaatgatatatattt-aagtactctact 238
           ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct: 311 ctgtattagaattggaggtagattttgctatggtatgagatatatttcaagtactctact 252

                                                              
Query: 239 acaaaaagttttctactaatacaaattcagatctgactcctgaattctgat 289
           |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaacaagttttctactaatacaaattcagatctgactcctgaattctgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)