BAC Information

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BAC

Clone NameMSMg01-157E17
Chromosome3 (Build37)
Map Location 93,160,094 - 93,160,317
singlet/doubletsinglet
Overlap genenone
Upstream geneSprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr
Downstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157E17.T7 (MSMg01no157_e17.b1)MSMg01-157E17.TJ (MSMg01no157_e17.g1)
ACCAG357813AG357814
length743747
length of high quality
(start - end)
224 (424 - 647)294 (61 - 354)
definitionCHROMAT_FILE: MSMg01no157_e17.b1 PHD_FILE: MSMg01no157_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:36 2005CHROMAT_FILE: MSMg01no157_e17.g1 PHD_FILE: MSMg01no157_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTATACGACTCACTATATTCAGAGAATCCGCGGAATTCTGATACTGT
TCCTAACAATTAATCTTGTCTGTTAAAGTCAGAAATGTGGGCTTCACCTT
GATGATGACTCAGCATATGCCTGTATTCCACTGAGGCCCTGCTGTTTACT
CTAGTTGGCGAAGATGACCCAGTTTGTTACCCTCTTGGATTTCAGATGTA
AAGAGACAGAAAACGTCAACGAGAATGAACAGTGAGTCTAAAGTAGCAGG
AAGTCATTGCAAATGGGCCACTTGGAAGTTGGACACATGCATTTCTGAAT
AAAACCATCTTTTTGTTTGTTTTGTCTTTTAGGTGTTGAATCAGATATTG
TTTTTTCTACCGCCTCCGCTCCCCTGTGACTCTCTGTGTTTGTGCTTACA
AAGACTGCTTCACAAACATGCCATTTAACTGCTTCATATTTGGTTCTGTA
GTACATGTATAAGAATAACACCTCAACGAGTTAGTGTACAGGAGCTTCTT
AAGGTAGGGCTACCGCATAGGAAATGCTTAGTGCTTTTAGCTATTAATGC
TTAATGAGCCATTCAGTATTAATATGTTTTCATTTGGGGCTGCTAATCAC
ATAGAGAATGACATTTGCAGGGTGTGACAGGGTGTAGTTTGAAGGGCAGT
TGATGCTTGTTGAATGAGGACTGAATTCCTGCAGGAGATGGCAGTTGCTC
CAGAGGGAGGCTCCAGATGCAGATGGGATCATTTTCTTCGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAA
AATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAATCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCAACCACTCTGGAGATCAGTCTGGCG
GTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTC
TCTTGGGCATACCATCCCCAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATCGATTTATGAAATT
CCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAG
CCCATAACCTAAGATACTCAAGATATAAGATACAATTTCCTAAACACATG
AAACTCAAGAAAAATGAATACTGAAGTGTGAACACTATGCCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_e17.b1 MSMg01no157_e17.b1 CHROMAT_FILE:
MSMg01no157_e17.b1 PHD_FILE: MSMg01no157_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:36 2005
         (224 letters)



>mm_chr3_93159894_93160517
          Length = 624

 Score =  426 bits (220), Expect = e-124
 Identities = 223/224 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaactgcttcatatttggttctgtagtacatgtataagaataacacctcaacgagtta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 424 tttaactgcttcatatttggttctgtagtacatgtataagaataacacctcaacgagtca 365

                                                                       
Query: 61  gtgtacaggagcttcttaaggtagggctaccgcataggaaatgcttagtgcttttagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtgtacaggagcttcttaaggtagggctaccgcataggaaatgcttagtgcttttagcta 305

                                                                       
Query: 121 ttaatgcttaatgagccattcagtattaatatgttttcatttggggctgctaatcacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttaatgcttaatgagccattcagtattaatatgttttcatttggggctgctaatcacata 245

                                                       
Query: 181 gagaatgacatttgcagggtgtgacagggtgtagtttgaagggc 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gagaatgacatttgcagggtgtgacagggtgtagtttgaagggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)