BAC Information

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BAC

Clone NameMSMg01-157F01
Chromosome3 (Build37)
Map Location 61,412,867 - 61,413,151
singlet/doubletsinglet
Overlap genenone
Upstream geneMbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157F01.T7 (MSMg01no157_f01.b1)MSMg01-157F01.TJ (MSMg01no157_f01.g1)
ACCAG357829AG357830
length714704
length of high quality
(start - end)
669 (46 - 714)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no157_f01.b1 PHD_FILE: MSMg01no157_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:38 2005CHROMAT_FILE: MSMg01no157_f01.g1 PHD_FILE: MSMg01no157_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAGAGGAATCTCAAGTAGCTGATCAACACTTAAATAAATGT
TCAGTCACAGAAGTACCAATCAAAATGACTAATATTCTACCTTACACTCC
TCAGAATGGCTAAGATCAAAATCTCAAATGACAGCATGTGCTGGTGAGGT
TGTGGAGCAAGGGAACATTTCTCCATGTCTGGTGGGACTGCAAACTTGTA
CAACTCTGGAATTAATTTGGTGGTTTCTCAGAAGATTAGGGATAGTTCTA
CCTCAAGACCCAACTATACCACTCCTAAACATATAACTAAAAGATGCTCT
ACTATAACACATAGGACACAGGCTCAACTTGTCTCTCAACTGAAGAATGG
ATACAGAAAATGTATAGCTACACAATAGAATACTACTCAGCCATTAAAAA
CAAGGACATCATGAATTCAGCAGGCAAATGGATGGAACTAGAAAACATCC
TGAGTGAGTTATCCCGGACACAAAAGTACATACATGGTATGTACTCACTT
ATATGTGGATATTAACCATAAAGTACAGGATAAACATGCTATAATCTAAG
GATCCAACAAAGTCAAATAACAAGGAGGGCCCAGAGGAAGATAGTTAAAT
ATTTCTCAGAAGAGGAAACAAAATAGAGAGAAGGGAGATTAGGATGGGGC
AATCTCTAGGATGT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGAGAAGCACTGGAAAGAGAC
AGCTTTTGGTGTGTTCATCTTTCAATGAGCTGGTAGGAAAAATATGGTAG
CTTGTTATGAAATTTTACAGTGGAGAGATTCCATCACATCAAAATTGAAG
CAGCTTATCATTTCCCTATCTTGCATAAATTAACATCATTATTTGCAAGT
CTTAACTGGATATATGTTTTAAAAGTTTAACTAACTGACAATTATTTTGA
TGTTTCTCTTTGTAGTGAAATACAGAAAATGTGGATCATACTTAAAAGTA
TGATTTTAGTGTATATTCCCCCCCCCCCCGCGGTTCAAGTCAGCATAGAT
TCTAGAGACTTGCNCAAAGACAGAAAATGGAAAAAAATGAGAATGTCTGT
CTTTTCTCCTCCAATCTTGTTTCTGGCTCTACCTCCCTTCTCCTGCCTCT
TCCTCCTTCAAACATGCTACAACTTGTGTAATCCCTACCTTCACTGGCTG
ATTCTTTCAAACCCATTTCTACAGTGAATATTCAATGCAATTTAAATTGT
AAAAAGTAAATTGTGTTTTTAGTATAAATGTTTAATATATTTGAAAAAGA
AGGCAAGAAGGGAGGAGGAGGTGGAAGATGAGGTGAGTAAGGGGGCTGAG
ACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_f01.g1 MSMg01no157_f01.g1 CHROMAT_FILE:
MSMg01no157_f01.g1 PHD_FILE: MSMg01no157_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:38 2005
         (287 letters)



>mm_chr3_61412667_61413353
          Length = 687

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggagaagcactggaaagagacagcttttggtgtgttcatctttcaatgagctggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggagaagcactggaaagagacagcttttggtgtgttcatctttcaatgagctggtag 260

                                                                       
Query: 61  gaaaaatatggtagcttgttatgaaattttacagtggagagattccatcacatcaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaatatggtagcttgttatgaaattttacagtggagagattccatcacatcaaaatt 320

                                                                       
Query: 121 gaagcagcttatcatttccctatcttgcataaattaacatcattatttgcaagtcttaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagcagcttatcatttccctatcttgcataaattaacatcattatttgcaagtcttaac 380

                                                                       
Query: 181 tggatatatgttttaaaagtttaactaactgacaattattttgatgtttctctttgtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tggatatatgttttaaaagtttaactaactgacaattattttgatgtttctctttctagt 440

                                                        
Query: 241 gaaatacagaaaatgtggatcatacttaaaagtatgattttagtg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatacagaaaatgtggatcatacttaaaagtatgattttagtg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)