BAC Information

Click to search

BAC

Clone NameMSMg01-157I08
Chromosome3 (Build37)
Map Location 10,169,795 - 10,170,107
singlet/doubletsinglet
Overlap genenone
Upstream geneZbtb10, Zfp704, Pag1, LOC621504, Fabp5, LOC100041480
Downstream genePmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157I08.T7 (MSMg01no157_i08.b1)MSMg01-157I08.TJ (MSMg01no157_i08.g1)
ACCAG357981AG357982
length724725
length of high quality
(start - end)
318 (37 - 354)---
definitionCHROMAT_FILE: MSMg01no157_i08.b1 PHD_FILE: MSMg01no157_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:52 2005CHROMAT_FILE: MSMg01no157_i08.g1 PHD_FILE: MSMg01no157_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAT
TGTAATTTATCATGCAGCCCACTTGATTGAACAGTGTCTAGCATGTGACA
ATTACCATGTGGAAGTTATGTGGTTTTTTTTCATTGTATCCAATGGGAGC
AAGAGTGGGGTGGGAGGGGCTACATGGCATCCTATGGGTTTGAACTGTTC
TCTGCACTTTCTGAAGTAAGTTCTGCAAACAACAATGGCTCTAATAATTT
ACAGTTTGATGAGGTTGTCTTTTCTGCTTTCTCCAGAGAGCCAGCCCCTT
TTCAGACAGACTTACATTTCTGGCTCATGGCTGTTAATTCTCACCTTTCC
TTCATTATTTTTCACACCCCCGCCGATCACTGAAAACAAAGTGCTTCAGT
TTATGTCTTCTCTGTCCGAGAGATGACCTGACTAAAACTCATTCATCTTA
TCTATGCATTAATTACTGAAAAAAAAACTAATTACAAGACATCAAGAATA
ATAGCATAATAACACCAAATGCCAGGGTATTCACATCACTCCAAATTCCA
ACAAGTCTTAAAATTCCAACAACATTTTATCTTTTTTTTCTTTATTTTTT
TATTAGATATTTTCTTTATTTACATTTCAAATGCTATCCCGAAAGTTCCT
ATACCCTCCCCCCGCCCTGCTCTCCTACCCACCCACTCCCACTTCTTGGC
CCAGGTGTTCCCCTGTACTGGGGC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTTTGAAAGTTGCTTTGAAGGGGGCCAAAATGA
AAAGAAGTTGGTAATGCACAAAGAACAGGGGGGGGGGTTAAAACATCTGC
TAAGAAGCCCAGCCCTCCGTTCATGGGGACCCAGCAAAGGGGGGGCCGCT
AAAACATCGGCTAAGAAGCCCGGCCCTCCATTCATTGGGACCCAGAACAG
GGGGGGGGGCAAAAAAATCGGCTAAGAACCCCGGCCCTCCATTCACGGGG
ACCCAGCAAAGGGGGGGGGGTTAAAAAATCGGCAAAGAAGCCCAGCCCTC
CGTTCTTGTTGACCCACCCCAGCCGGGGGGGGTTAAAAAATCGGCTTAGA
AGCCGGGCCCTCCATTCATTGGAACCAAGAAAAGGGGGGGGCACTAAAAC
ATCTGCTTAGAACCCCGGCCCTCCATTCACGGGGATCCAGCAAAGGGGGG
AATGCTAAAACATCGGCTTAGAAGCCCGGCCCTCCATTAACGGGGACCCA
GCCTCAATTCTAAAAGGTTTAAGGGAGTTCTTCAGCCTGACAGAACTGAA
CAACAGAATTTTCCAACAAATCTCAATTTTCAAGTTGGGAGAATGGGAAC
ATTTGAGTTCTCCCTGGCAGGGTTCCGGGCGGTTGAACTGGAATCTCTTC
ACCACATTCACCTGAAAAAACAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_i08.b1 MSMg01no157_i08.b1 CHROMAT_FILE:
MSMg01no157_i08.b1 PHD_FILE: MSMg01no157_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:52 2005
         (318 letters)



>mm_chr3_10169591_10170307
          Length = 717

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacattgtaatttatcatgcagcccacttgattgaacagtgtctagcatgtgaca 64
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgttgtagtttatcatgcagcccacttgattgaacagtgtctagcatgtgaca 264

                                                                       
Query: 65  attaccatgtggaagttatgtggttttttttcattgtatccaatgggagcaagagtgggg 124
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 attaccgtgtggaagttatgtggttttttt-cattgtatccaatgggagcaagagtgggg 323

                                                                       
Query: 125 tgggaggggctacatggcatcctatgggtttgaactgttctctgcactttctgaagtaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgggaggggctacatggcatcctatgggtttgaactgttctctgcactttctgaagtaag 383

                                                                       
Query: 185 ttctgcaaacaacaatggctctaataatttacagtttgatgaggttgtcttttctgcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 ttctgcaaacaacaatggctctaataatttacagtttgatgaggttgtcttctctgcttt 443

                                                                       
Query: 245 ctccagagagccagccccttttcagacagacttacatttctggctcatggctgttaattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctccagagagccagccccttttcagacagacttacatttctggctcatggctgttaattc 503

                         
Query: 305 tcacctttccttca 318
           ||||||||||||||
Sbjct: 504 tcacctttccttca 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)