XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTGTCC
ACAAAGGCATTTCTGAAATAGAGCTTTAGCAAGCAGTGTGCACTACTTAA
ACTGAATATTTTGCAGAAAAATGATAGTGAGTATGAAATGGACCACTTCA
AAACACCTGTCCTGTCCTGATTGTGAAATCTTAAAGATTTTAGAAGAAAT
TTCACACCGAGCCTGGCTCATCCCACAAGGAAGAAAACATCATTTGTTTT
AATTACTAGGTTTATTATCCTAAAAGCTTTCAGGTTTTCTTTTCCAACTT
GGATTTAGATCAAACTCCTAAATAAATGAAACATCTTTCTCGTCCTTTTA
ATTTTTTTCTGACTCCGCCCACCTTGGTCTGCTCAGGCTAGAGCTGTTTC
ACATTTTGGAATGAAGCAACTAATAAAGTGGTTTGGGTTTGGGCTGGAAG
GCTTTTCTTTTCTCTGTCTAGAATTCTGTCTTCTTCAGCTGAAGCCAGTG
CATCTCAGTCCCATTTTTAAATTTTGGTTTGGAAGACACCATACCTCAGT
CAAAAACAAAACCAAAAGACACAAACAACTACAAATGAAGCATTTGACAA
GAGCCGAGATTCTCCTTTGCTCACTTCAGACACCTAAGAGGAATTTATAT
CTAGAAACCACCATTACTTCCTCAAGACTTCACAAAAATTCATGGACTGT
AATGAAATATGTCCTTATTATGAGTATTCTTCTGTCTTATGTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTAAAAAAAATAATAATCAGTATCAAGATGACTCCTGTA
AGGTGGGGAGGGCATGGAGGGACAGCAAGATGCAGTAATATAATCCCTGA
CGAATATTGAGTTACCTTGCTAATGGTAATAAATATGACTACTGACTCTG
AAAGACTTGGATTCTCCTGTGTTTTTTCCTGTATTGTTTTATGGAAGATT
CAGAAGTAACATCCATCCACAGACTTTATTCAGCATTAATTCTACAATGG
CAAGGTATTTTAAGTGAAGACATGGATTATCTTATTAACAGCTGAACAAC
CCTTGGGATGCGCCTCCTATTTCAGGGCTCTATTATAGTTAACAAATGAA
GGCTGAAGAAAGGCCAAATAAGCTACTCAATTTTCACTCAGATGTTAAGT
GTGAGTTCTTCACCTTGAACTATGTCATCTCAAAGTTCCTACTCTTAAAC
ACCGTGTGATTTTATTATTCTCCCTTGAACTGAAATGTCATGCCTGATAC
TGAGGGAAGAAGAATATTATAAATCCCCCATTCATCTCCAATTCATTATA
TCTTGGGTCCAGTTCTAATAAAGACATGAGGGTACCAGGAGGAGACCCTC
CCAGATGTCTTATGTTGCTCTGGATGGAACAAGGGCTCAGAGGCAATGTA
ATGACCTTCCCTCTGTCCCCTTGCAAATGACTGAACAATA

Query= MSMg01no157_i13.b1 MSMg01no157_i13.b1 CHROMAT_FILE:
MSMg01no157_i13.b1 PHD_FILE: MSMg01no157_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:53 2005
         (319 letters)



>mm_chr3_56308360_56309078
          Length = 719

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttgtccacaaaggcatttctgaaatagagctttagcaagcagtgtgcacta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatttgtccacaaaggcatttctgaaatagagctttagcaagcagtgtgcacta 263

                                                                       
Query: 64  cttaaactgaatattttgcagaaaaatgatagtgagtatgaaatggaccacttcaaaaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttaaactgaatattttgcagaaaaatgatagtgagtatgaaatggaccacttcaaaaca 323

                                                                       
Query: 124 cctgtcctgtcctgattgtgaaatcttaaagattttagaagaaatttcacaccgagcctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctgtcctgtcctgattgtgaaatcttaaagattttagaagaaatttcacaccgagcctg 383

                                                                       
Query: 184 gctcatcccacaaggaagaaaacatcatttgttttaattactaggtttattatcctaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctcatcccacaaggaagaaaacatcatttgttttaattactaggtttattatcctaaaa 443

                                                                       
Query: 244 gctttcaggttttcttttccaacttggatttagatcaaactcctaaataaatgaaacatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctttcaggttttcttttccaacttggatttagatcaaactcctaaataaatgaaacatc 503

                           
Query: 304 tttctcgtccttttaa 319
           ||||||||||||||||
Sbjct: 504 tttctcgtccttttaa 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no157_i13.g1 MSMg01no157_i13.g1 CHROMAT_FILE:
MSMg01no157_i13.g1 PHD_FILE: MSMg01no157_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:53 2005
         (372 letters)



>mm_chr3_56481365_56482136
          Length = 772

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcagggctctattatagttaacaaatgaaggctgaagaaaggccaaataagctactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atttcagggctctattatagttaacaaatgaaggctgaagaaaggccaaataagctactc 511

                                                                       
Query: 61  aattttcactcagatgttaagtgtgagttcttcaccttgaactatgtcatctcaaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aattttcactcagatgttaagtgtgagttcttcaccttgaactatgtcatctcaaagttc 451

                                                                       
Query: 121 ctactcttaaacaccgtgtgattttattattctcccttgaactgaaatgtcatgcctgat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctactcttaaacactgtgtgattttattattctcccttgaactgaaatgtcatgcctgat 391

                                                                       
Query: 181 actgagggaagaagaatattataaatcccccattcatctccaattcattatatcttgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 actgagggaagaagaatattataaatcccccattcatctccaattcattatatcttgggt 331

                                                                       
Query: 241 ccagttctaataaagacatgagggtaccaggaggagaccctcccagatgtcttatgttgc 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 330 ccagttctaataaagacatgagggcaccaggaggagaccctcccagatgtcttatgttgc 271

                                                                       
Query: 301 tctggatggaacaagggctcagaggcaatgtaatgaccttccctctgtccccttgcaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tctggatggaacaagggctcagaggcaatgtaatgaccttccctctgtccccttgcaaat 211

                     
Query: 361 gactgaacaa 370
           ||||||||||
Sbjct: 210 gactgaacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)