BAC Information

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BAC

Clone NameMSMg01-157N18
Chromosome3 (Build37)
Map Location 76,096,850 - 76,097,150
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157N18.T7 (MSMg01no157_n18.b1)MSMg01-157N18.TJ (MSMg01no157_n18.g1)
ACCAG358227AG358228
length739734
length of high quality
(start - end)
319 (38 - 356)300 (68 - 367)
definitionCHROMAT_FILE: MSMg01no157_n18.b1 PHD_FILE: MSMg01no157_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:17 2005CHROMAT_FILE: MSMg01no157_n18.g1 PHD_FILE: MSMg01no157_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAT
CAAGTGGAAACAAGAAGAACTATTCTAAGAATCAACCAAACAAGGAGCTG
GTTCTTTGAGAAAATCAACAAAATAGATAAACCCTTAGCTAGACTCACTA
GAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGA
GACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTA
CCAAAGGATATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAAT
TTCTGGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGTT
CCAAATTATTCCTATACCCCCCCCCGAAATAGAAGCAGTCATTAATAGTC
TCCCAACCACCCCCACCCCAACACCAGATTGCAGAGTTCTATTAGACCTT
CAAAGAAGACCTAATTCCAGTTCTTCACAAACTATTGCACAAAATAGAAG
TAGAAGGTACTCTACCCAATTCATTATATGAAGCCACAATTACTCTGATA
CCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTC
CCTTATAAATATAGATGAAAAATACTCAATAAAATTCTCGCTAACCAAAT
CCAAGAACACATTAAAGCAATCATCCATCCTGGCCAAGTAGGTTTCATTC
CAGGGATGCAGGAATGGTTTAATATACGGAAATCCATCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTAAAATAATGAGGAACAGAAAAAAAAAACAG
GAAGAACAAAAACTTCAAAGTATTACACAGAAAAGGGAAAACCACCTAAC
AGTTTAAGATAAAGAAGAACCAAGAGCATCTCTGAAAACAAGCTAGAGAG
AAAAGGAAATATAGATATAATCAGTATGAAACCCTCTGACTTTAACATTG
CTTTATTAATGTTTTTATTTTTTGTATTCATTCTGAAAAGTAATGGGCTT
CATTAAGACATTTCCAGCAATGCATACTTTGTTTTATCAACTCTCCCTCT
GCATTCTTCTCCCCTTGCCTCTGCGCCTTACTGTAACTCTCTTACATAAC
TATTCACCTTCCAATTTTAGGTTACATGCATTCCAATAAAAGCACTCATT
TTTAGGGATCTAACTTCTCTAAAAACTTTTTATTCATATTACACCCTATT
ATAAACACACACACATACATACATAGATACATACACATATATATATATAC
ATATATATGTATAAAAATTAATATCTAGAATATGTATATAAGAAAAATGC
AGCAAGGTTTTCTGAATCTGAGTTATCTCAATAAGTATAATAACAGTAAT
TTTGTCCATTTTCATGCTAATTAATGTTTTCATTTATTATGGATGAATAA
AACTTCATTGTGCTTTATATAATGTATTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_n18.g1 MSMg01no157_n18.g1 CHROMAT_FILE:
MSMg01no157_n18.g1 PHD_FILE: MSMg01no157_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:17 2005
         (300 letters)



>mm_chr3_76096650_76097350
          Length = 701

 Score =  567 bits (293), Expect = e-166
 Identities = 299/301 (99%), Gaps = 1/301 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaaataatgaggaacag-aaaaaaaaaacaggaagaacaaaaacttcaaagtattac 59
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaaaataatgaggaacagaaaaaaaaaaacaggaagaacaaaaacttcaaagtattac 442

                                                                       
Query: 60  acagaaaagggaaaaccacctaacagtttaagataaagaagaaccaagagcatctctgaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaaaagggaaaaccacctaacagtttaagataaagaagaaccaagagcatctctgaa 382

                                                                       
Query: 120 aacaagctagagagaaaaggaaatatagatataatcagtatgaaaccctctgactttaac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaagctagagagaaaaggaaatatagatataatcagtatgaaaccctctgactttaac 322

                                                                       
Query: 180 attgctttattaatgtttttattttttgtattcattctgaaaagtaatgggcttcattaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgctttattaatgtttttattttttgtattcattctgaaaagtaatgggcttcattaa 262

                                                                       
Query: 240 gacatttccagcaatgcatactttgttttatcaactctccctctgcattcttctcccctt 299
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gacatttccagcaatgcatactttgttttatcaactctccctctgcattcatctcccctt 202

            
Query: 300 g 300
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 701
Length adjustment: 9
Effective length of query: 291
Effective length of database: 692
Effective search space:   201372
Effective search space used:   201372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)