BAC Information

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BAC

Clone NameMSMg01-158A13
Chromosome3 (Build37)
Map Location 40,401,053 - 40,401,613
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158A13.T7 (MSMg01no158_a13.b1)MSMg01-158A13.TJ (MSMg01no158_a13.g1)
ACCAG358357AG358358
length714708
length of high quality
(start - end)		234 (114 - 347)562 (65 - 626)
definitionCHROMAT_FILE: MSMg01no158_a13.b1 PHD_FILE: MSMg01no158_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:30 2005CHROMAT_FILE: MSMg01no158_a13.g1 PHD_FILE: MSMg01no158_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGGCCGCTATACGACTCCTATATTCGAGAGGATCCGCGGAATTCCAGGCA
GGCAGGTAGGCAACAGGCTCAGGAATCAGTTGTTTGGAGGGTCTGCATGA
AGACTATTGGCCATATATGTGCAGGGGGCCTAGGTCCAGGACATATTCAC
TCTTTGGTTGGTGATTCAGTCTCTGGGAGCCCCCAAGGGTACAGGTTAGT
TGACTCTGTCCTCTTTGGGTCCCTCAGTCTTCTTCCCAAGCCTTCGATAA
GACTCCCCAATCTTCATCTAATGTTTGGTGTGTGGGTCCCTGCATTTCTT
TCAATTGTCTGCTGGGTGGAGCCTCTCAGAGGACAGTTATGCTAGGTTTC
TGTCTGCCCGCCCCCCCAGTATCAGTGTCAGATATTGGTTCTTGCCCATG
CCCCCCCATTTCAAATAGAAGCAGTCATTTTTGGCCACTCTCTCAGTCTC
TGCTTATCTTTGTCACAAAGGACATAGAAGATCTGTTCTCAGCTAAATAT
CGACTACCAGGCACACACATCTTGTAGGCAGGACACATTTTGTGGAAGGC
TTTGTGGGTGTGCTGCTGTCCCTTTTCCTTCTCCTGGTATACCTGTCTGG
TTTTTGGACTGAGCCGTCCAGGTATCTATACCCAACATTGCCTAGAAATT
TCTGCTTAAAGGCACTCCCCTTTAAACCTTCTGGGTTCCTCCTCCTCTAT
CCTAGGTTTTCGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTAAGAGAAAGATAAACGTACCAATAGAAAAATGGC
CCCAAAGCTAACATCATCCACAAATGGAGATGTGTGGATGGCAGTACATA
TGCAAAACACTTTATTTTTAATCAGAGAAAATGAAACAAGCACCTAAAAA
GATATCACTTTTTTAATCTTTCATAGTAAAAAAAGGAGAAAGAATACAGT
AATGCTCATAGCTACTGCCAGAGTTAACTTAAGTTATCCACTTGTCACAC
TTGGGAATGGAGACCCTCACTGAGGGATGGTCTCTATTGGACTGGCATGT
GTCTGGCATTGGTGTCTGTGAGACACCCCCTTTCCTTTATTTTTAACATG
TTTATTGACCACCTGGAGGCTTTACATTGTACACCCTGATCACTCCCTCT
CCTTAGTACCCTCCCCAGGTCTGCTTCTCCACCCAAGTTGCCTCTCCCTG
GGGAAAAAAAATGGAAAAAACAAAGCCAAACAACACAACAAGAACAACAA
CAGCAAACCAAGCCCAGTCTGTGTTTTCTGTACAGTCACTGGAGCATGGT
CACACTGCTGTTAGCCAGCCTCTTAGAGAAATGGAGTCTTTCCTCCTGCC
CCCCGCTCCCACTAGAAGCCATCTAGTATTGCTTTTAAGAATAAGGATAT
GAAGTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_a13.g1 MSMg01no158_a13.g1 CHROMAT_FILE:
MSMg01no158_a13.g1 PHD_FILE: MSMg01no158_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:30 2005
         (562 letters)



>mm_chr3_40400954_40401914
          Length = 961

 Score = 1017 bits (526), Expect = 0.0
 Identities = 553/562 (98%), Gaps = 1/562 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagagaaagataaacgtaccaatagaaaaatggccccaaagctaacatcatccacaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 660 ctaagagaaagataaacgtaccaatagaaaaatggccccaaagctaacattatccacaaa 601

                                                                       
Query: 61  tggagatgtgtggatggcagtacatatgcaaaacactttatttttaatcagagaaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tggagatgtgtggatggcagtacatatgcaaaacactttatttttaatcagagaaaatga 541

                                                                       
Query: 121 aacaagcacctaaaaagatatcacttttttaatctttcatagtaaaaaaaggagaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aacaagcacctaaaaagatatcacttttttaatctttcatagtaaaaaaaggagaaagaa 481

                                                                       
Query: 181 tacagtaatgctcatagctactgccagagttaacttaagttatccacttgtcacacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tacagtaatgctcatagctactgccagagttaacttaagttatccacttgtcacacttgg 421

                                                                       
Query: 241 gaatggagaccctcactgagggatggtctctattggactggcatgtgtctggcattggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaatggagaccctcactgagggatggtctctattggactggcatgtgtctggcattggtg 361

                                                                       
Query: 301 tctgtgagacaccccctttcctttatttttaacatgtttattgaccacctggaggcttta 360
           ||||||| ||||||||||||||||||||||||||||||||||||  |  |||||||||||
Sbjct: 360 tctgtga-acaccccctttcctttatttttaacatgtttattgattatttggaggcttta 302

                                                                       
Query: 361 cattgtacaccctgatcactccctctccttagtaccctccccaggtctgcttctccaccc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 301 cattgtacaccctgatcactccctctccttagtacccttcccaggtctgcttctccaccc 242

                                                                       
Query: 421 aagttgcctctccctggggaaaaaaaatggaaaaaacaaagccaaacaacacaacaagaa 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtggcctctccctggggaaaaaaaatggaaaaaacaaagccaaacaacacaacaagaa 182

                                                                       
Query: 481 caacaacagcaaaccaagcccagtctgtgttttctgtacagtcactggagcatggtcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caacaacagcaaaccaagcccagtctgtgttttctgtacagtcactggagcatggtcaca 122

                                 
Query: 541 ctgctgttagccagcctcttag 562
           |||||| |||||||||||||||
Sbjct: 121 ctgctggtagccagcctcttag 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space:   524952
Effective search space used:   524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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