BAC Information

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BAC

Clone NameMSMg01-158D06
Chromosome3 (Build37)
Map Location 59,440,414 - 59,440,699
singlet/doubletsinglet
Overlap genenone
Upstream gene4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732
Downstream geneLOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158D06.T7 (MSMg01no158_d06.b1)MSMg01-158D06.TJ (MSMg01no158_d06.g1)
ACCAG358482AG358483
length733732
length of high quality
(start - end)
315 (49 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no158_d06.b1 PHD_FILE: MSMg01no158_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:42 2005CHROMAT_FILE: MSMg01no158_d06.g1 PHD_FILE: MSMg01no158_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAGTGGGGTTATTTGA
TTTTATGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCCTATCTGATTTGGAATAGGTAAAGATCCTTTCCCAATCTGTTGATGGT
CTTTTAGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTCTGCAATTT
CATGAGGTCCCATTTATTGATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTATTCAGGAATTTTTCCCCTCTACTCATATCTTCGAGGCTTTCCCCC
ACTTTCTCCTCTATAACTTTCACCGCTCTCTGGTTTTATGTGGAGTTCCT
TGATCCACTTCGATTCCACCTTAGTACAAGGAGATAGGAATGGATCAATT
CTCATTCTTCTACATGATGACTGCCAGTTGTGCCAGCATCATTTGTTGAA
AATGCTGTCTTTTTTCCACTGGATGGTTTTAGTTCCCTTGTCAAAGGTCA
AGTGACCATAGGTGTGTGGGTTAAATTCTGGGTCTACAATTCTATTCCAT
TGGTCTACTTGTCTGTTGCTATACCAGTACCATGCAGTTTTTATCACAAT
TGCTCTGTAGTACAGCTTTAGGTCAACCATGGTGATTCTACCAGAGGTTC
TTTTATCCTTGAGAAGAGTTTTTGTTATCCTAG
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCCCTTCAGAGGAGAGAAGGT
AAAAAGAATATGCAAAAGTAATCTAATATTTTAAGTAATGGGTTGATGCT
TCCAGGATGCACATGCATGGTTGATCCTTTCAACTGCTTTGCAGCCTTCT
TAACCTTCCTATATCCATGATCCATACCCTTTTAGTTCCCCAAATTGGAG
AATGACTTTTGACTTAGGAGTTCCAGTGTTCAGATTGACATGAAAGCAGG
GTTGTGTTATGATTGCAACATAGAGGAATGCCAAGAAAGGCTGCTGCCCC
ACAGGTTAATGATTATTTGTGCCACACCCCCCACCTGAGGTAGGTGTCCT
ATGGATGAGCTGGTAGACACCGCTTAGAAAAAACAGACAAAAAATTTCAC
AGAGGAACAGATGATGGCAAGTCCTACTCAATTTTTAAAAGTTTTCATCT
AATCTGAGGATATGGAATAACAGGATGCAGCAAGTGTTTAATCAAAGTGT
AGTTTTTTTCCATGATTGTACAAGTAACTATATGAATCTACAACGTTTAT
GTTTAATATGTGGGGAGCTACGTACAAATCTAAGTATTAGATGAATTGGT
TTGCAAGTTGGAAAAGAATAGCTATTTTATTTCATTGAAATTTTCTAAAT
GAACTGCGCTGCGGGCGTTAGCCTTAAGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_d06.g1 MSMg01no158_d06.g1 CHROMAT_FILE:
MSMg01no158_d06.g1 PHD_FILE: MSMg01no158_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:42 2005
         (287 letters)



>mm_chr3_59440214_59440900
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcccttcagaggagagaaggtaaaaagaatatgcaaaagtaatctaatattttaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttgcccttcagaggagagaaggtaaaaagaatatgcaaaagtaatctaatattttaagt 427

                                                                       
Query: 61  aatgggttgatgcttccaggatgcacatgcatggttgatcctttcaactgctttgcagcc 120
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 426 aatgggttgatgcttccaggatgcacatgcacggttgatcctttcaactggtttgcagcc 367

                                                                       
Query: 121 ttcttaaccttcctatatccatgatccatacccttttagttccccaaattggagaatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcttaaccttcctatatccatgatccatacccttttagttccccaaattggagaatgac 307

                                                                       
Query: 181 ttttgacttaggagttccagtgttcagattgacatgaaagcagggttgtgttatgattgc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttttgacttaggagttccaatgttcagattgacatgaaagcagggttgtgttatgattgc 247

                                                         
Query: 241 aacatagaggaatgccaagaaaggctgctgccccacaggttaatga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aacatagaggaatgccaagaaaggctgctgccccacaggttaatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)