BAC Information

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BAC

Clone NameMSMg01-159A02
Chromosome3 (Build37)
Map Location 140,115,772 - 140,116,362
singlet/doubletsinglet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159A02.T7 (MSMg01no159_a02.b1)MSMg01-159A02.TJ (MSMg01no159_a02.g1)
ACCAG359060AG359061
length733734
length of high quality
(start - end)
518 (43 - 560)596 (74 - 669)
definitionCHROMAT_FILE: MSMg01no159_a02.b1 PHD_FILE: MSMg01no159_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:38 2005CHROMAT_FILE: MSMg01no159_a02.g1 PHD_FILE: MSMg01no159_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAACTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCTCAATCTCTTGGTGTTTTTTTT
TTTTTTTTTTTTTTTTTGCTTATTGATGGTGTCTTTTGCCTTGCAGAAGA
TTTGAAACTTTATGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAA
GCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGGACCCATATCTTTGAG
GCTTTTCCCTACTTTCTCTTCTATGAGTTTCAGTGTCTCTGGTTTTATGT
GGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAAT
GGATCAATTCGCATTCTTCTACATGATAACCTCCAGTTGTGGCAGCATCA
TTTTTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTGAGCTCCCTTGT
CAAAGATCAAGTGACCATAGGTGGGTGGGTTTATCTCTGGGTCTTCAATT
CTGTTCCATTGGGTTATTTGGTTGTCACGATACCAGTACGATGCATTTTA
TCATAATTGCTCTGTAGTGCAGCTTTAGGTCAGGCATGGTGATTCCACCA
GAGGTTCTTGTATCTTTGAAAGAAGGTTTGCTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCAACATTCTGCTGCTTTCCAGACA
GTTCCCCTAGAGAATCTTTGACAAGCAGCTGTTTGCTGCTTAGACTACTG
CAGGTGAGGTTATTTAAATCTTTACTTTCTACGTTTCCCATAGTTTGTAA
ATTTCACTAACTACTTTCTCGTCTAATTAACTATTTTATCTATTTACATT
CCAAATTTTTCCCACTCTCCCAGTCCCCCCTCCCAGAGTTCTTCACCATC
TCCCCCATCCCTTTTGTTTCTGAGTGGATTCCCCCCAACACACACCTCCC
AGGACATTTCCCTTTCCTGTGACATCAAGCCTCTACAGGATGAGGCCTAT
CCCCACCCACAGAGGCCAAACAAAGTAATCCTCTGGTACCTTTGTGCCTG
GAGCCTAGGAGCAGCCCATGTATACTCTGTTTGGTGGCTTAGTATGGGAG
CTTTGAGGAGTCTGGGTTAGTTGATACTGTTGTTCTTCCTTTGGGGTTGT
CATTTCCTTCTGCTCCTTCAGTCTTTCTTCTAACTCTTCCAAAGGGGGTC
CCTGAGGACCTCATTCCAGTGAGTGGCTGGAAGTATCTGCAGCTATCTCA
GTCCGATGCTGTTACAGCCTCTCAGAGGACAGCCATGCTAGGCCTCTGTC
TGCAAGCATAATGTGGCATCAGTAACAGTGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_a02.g1 MSMg01no159_a02.g1 CHROMAT_FILE:
MSMg01no159_a02.g1 PHD_FILE: MSMg01no159_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:38 2005
         (596 letters)



>mm_chr3_140115566_140116561
          Length = 996

 Score = 1071 bits (554), Expect = 0.0
 Identities = 582/592 (98%), Gaps = 3/592 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   cattctgctgctttccagacagttcccctagagaatctttgacaagcagctgtttgctgc 66
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 207 cattctgctgctttccagacagttcccctagagaatctttcacaagcagctgtttgctgc 266

                                                                       
Query: 67  ttagactactgcaggtgaggttatttaaatctttactttctacgtttcccatagtttgta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttagactactgcaggtgaggttatttaaatctttactttctacgtttcccatagtttgta 326

                                                                       
Query: 127 aatttcactaactactttctcgtctaattaactattttatctatttacattccaaatttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatttcactaactactttctcgtctaattaactattttatctatttacattccaaatttt 386

                                                                       
Query: 187 tcccactctcccagtcccccctcccagagttcttcaccatctcccccatcccttttgttt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcccactctcccagtcccccctcccagagttcttcaccatctcccccatcccttttgttt 446

                                                                       
Query: 247 ctgagtggattccccccaacacacacctcccaggacatttccctttcctgtgacatcaag 306
           |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctgagtggattccccccccc-cacacctcccaggacatttccctttcctgtgacatcaag 505

                                                                       
Query: 307 cctctacaggatgaggcctatccccacccacagaggccaaacaaagtaatcctctggtac 366
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctctacaggatgaggcctatccccacccacagaggccaaacaaagtaatcctctggtac 565

                                                                       
Query: 367 ctttgtgcctggagcctaggagcagcccatgtatactct--gtttggtggcttagtatgg 424
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 566 ctttgtgcctggagcctaggagcagcccatgtatactctttgtttggtggcttagtatgg 625

                                                                       
Query: 425 gagctttgaggagtctgggttagttgatactgttgttcttcctttggggttgtcatttcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gagctttgaggagtctgggttagttgatactgttgttcttcctttggggttgtcatttcc 685

                                                                       
Query: 485 ttctgctccttcagtctttcttctaactcttccaaagggggtccctgaggacctcattcc 544
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 686 ttctgctccttcagtctttcttctaactcctccaaagggggtccctgaggacctcattcc 745

                                                               
Query: 545 agtgagtggctggaagtatctgcagctatctcagtccgatgctgttacagcc 596
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 746 agtgggtggctggaagtatctgcagctatctcagtctgatgctgttacagcc 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)