BAC Information

Click to search

BAC

Clone NameMSMg01-159B01
Chromosome3 (Build37)
Map Location 78,479,898 - 78,480,180
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159B01.T7 (MSMg01no159_b01.b1)MSMg01-159B01.TJ (MSMg01no159_b01.g1)
ACCAG359106AG359107
length778735
length of high quality
(start - end)
308 (48 - 355)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no159_b01.b1 PHD_FILE: MSMg01no159_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:43 2005CHROMAT_FILE: MSMg01no159_b01.g1 PHD_FILE: MSMg01no159_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCCTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGT
TCTGTTCAGGAATCTTTCCTCTGTACTCATATCTTCAAGGCTTTTCCCCA
CTTTCTCTTTTTTTTTGCTCCCCCCCCCCCGTCTTTATGTGAAGCTCCTT
GATCCCTTTCTTCTCCCCCCTTTAACAATAATTTTTTTTTCCCGTGCGTC
ATTCGGTATTTTTCTTACTTCCTTTTCTCCCTCTTATGTTTCCTTGACCT
TCTTACCCGCATCACCTCCTTTCTTCCTTACCTCGTCCCGAATTCTCCTC
TCCCCTTCTTTTTTCTCTCTCCTTTTCCTTCCCCCCCTTTCTCCTTATTT
CTTTCCTTTCTTCCTTTTCTTTTTTATTTTCTTTCTTTCTTTTCCTCTTT
TTCCTTTCCACTTTTCCTTTCTTCTCTTTATTCTTTCATTTTCCCCAATT
CTCTCTCTCTCTCCCTCCCGCCTTTTCCCTCCTTTCTACGCGTCCTTCAC
TTTCCTTTACTCTTCCCCCCGGTTTTTC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTGGGACCCATGTGAGTTTC
AATGTCAAGAATGGCCTATCAAAGGGGTTTGCCAAACCTTACTAGTGATG
CAAAAATGACCTATGACAGAAGGAGCTGGTTCAGTACTCAGATAATTGTC
CTAAACCATCGAGGCCAGTGCTAGAAATGCCAGTGTGCTATGCTGAAATT
TCATCTTCTAGCAGCCTTATTTATAATAGCCAGAAGCTGAAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACA
ATGGAGTACTATTCAGCTATTACAACGAATGAATTTATGAAATTCCTAGG
CAAATGGTTGGACCTGCAGGGCATCGTCCTGAGTGAGGTAACCCAATCAC
AAAAGAACTCAAATGATATGTACTCACTGATCAGTGGATATTAGCCCAGA
AACTTAGAATACCCAAGATATAAGTTACAATTTGCAAAACACATGAAACT
CAAGAAGAACAAAGACCAAAGTGTGGACACTTTGCTCCTTCTTAGAATTG
GGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAG
ACAAAAGGATGGACCATCTAGAGACTGCCGCACCTGGGGATCCATCCCAT
AATCAACCTCCAAACGCTGACACCATTGCATACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_b01.g1 MSMg01no159_b01.g1 CHROMAT_FILE:
MSMg01no159_b01.g1 PHD_FILE: MSMg01no159_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:43 2005
         (283 letters)



>mm_chr3_78479698_78480380
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctgggacccatgtgagtttcaatgtcaagaatggcctatcaaaggggtttgccaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctgggacccatgtgagtttcaatgtcaagaatggcctatcaaaggggtttgccaaac 260

                                                                       
Query: 61  cttactagtgatgcaaaaatgacctatgacagaaggagctggttcagtactcagataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttactagtgatgcaaaaatgacctatgacagaaggagctggttcagtactcagataatt 320

                                                                       
Query: 121 gtcctaaaccatcgaggccagtgctagaaatgccagtgtgctatgctgaaatttcatctt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctaaaccatcaaggccagtgctagaaatgccagtgtgctatgctgaaatttcatctt 380

                                                                       
Query: 181 ctagcagccttatttataatagccagaagctgaaaagaacccagatgcccctcaacagag 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagag 440

                                                      
Query: 241 gaatggatacaaaaaatgtggtacatttacacaatggagtact 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatggatacaaaaaatgtggtacatttacacaatggagtact 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)