BAC Information

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BAC

Clone NameMSMg01-159B04
Chromosome3 (Build37)
Map Location 46,943,725 - 46,944,011
singlet/doubletsinglet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849
Downstream geneLOC383850, LOC100039426, LOC666202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159B04.T7 (MSMg01no159_b04.b1)MSMg01-159B04.TJ (MSMg01no159_b04.g1)
ACCAG359112AG359113
length742742
length of high quality
(start - end)
314 (383 - 696)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no159_b04.b1 PHD_FILE: MSMg01no159_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:43 2005CHROMAT_FILE: MSMg01no159_b04.g1 PHD_FILE: MSMg01no159_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGTATCAATACCGAGTGGCAGAGAAACACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGACATGCAAATCAAAACAACCCTGAGATT
CCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GATGTTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTAGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCCGCAATACTTCTCCTGGGCA
TATATCCAGAATATGTCCCAACTGATCACCAAGAACACATGCTCAACTAT
GTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAATACTACTTAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAG
GAACTTGCACAATATGTACTCACTGATAAGTGGATAATAGCCCAGAAACT
TAGGATACCCAAGATATAAGATACAACTTGCCAAACGCATGAAATTCAAG
AAGAACGAAGACCAAAGTGTGGACACTTTACCCTTTCTTAGA
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTGCAATCACATAGCAAAGGGAA
AATAGAAGAAGTTTATGGTAAATGCATTTAAGGCTATACATGATTTGAAT
ACCACATGTACGTGGGTGATTTAATCAGTCAAAATTTGTAAATATGAAAT
TATTCTTATACACTGAAAACATATACAGTTAAAGGACTTACCCAACTTTA
TATAGTTTGTTTTACCAACAGAGTGACATGTTTTGAAAGGATTATTGACG
TGGAAGGCTAGATATTCTCACTAGTGCAATGATCATAGAACTGAAATAGC
CATTTTGTGACTATTTTTAATGCTTGACATTTGATAGGAGGAGATCCATA
TCTGACAGTTAAAACCTGGTCCAAAGTTATGGCTTGGAGTTTACAAGTCC
ATGGAAGAAATCTATTGATTATGGTTTAATATATGGACATGTAGTCAAAC
TACCGTTTAAATATTTATATAAATGTCCATAGACTATTGTTGGCCACAAT
CTTGGTCAGAGAAACTTCTGTGTGCAATAACTAATGTTTAAAGCAGAAAG
TGATAATGACTTAAAATGCTGAAAGTAAGAGAACTTTTAGTCCATATCTC
TAAACTGGACATTGATATTGTTCAGTTGGAGTCCTTGGTTTGCCCCATGC
CCCCATTCCTCATTCTCTTTTCAACCCAGCCCACTTGAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_b04.g1 MSMg01no159_b04.g1 CHROMAT_FILE:
MSMg01no159_b04.g1 PHD_FILE: MSMg01no159_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:43 2005
         (287 letters)



>mm_chr3_46943525_46944211
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgcaatcacatagcaaagggaaaatagaagaagtttatggtaaatgcatttaaggct 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 487 tattgcaatcacatagcaaagggaaaatagaagtagtttatggtaaatgcatttaaggct 428

                                                                       
Query: 61  atacatgatttgaataccacatgtacgtgggtgatttaatcagtcaaaatttgtaaatat 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atacatgatttgaataccacacgtacgtgggtgatttaatcagtcaaaatttgtaaatat 368

                                                                       
Query: 121 gaaattattcttatacactgaaaacatatacagttaaaggacttacccaactttatatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaaattattcttatacactgaaaacatatacagttaaaggacttacccaactttatatag 308

                                                                       
Query: 181 tttgttttaccaacagagtgacatgttttgaaaggattattgacgtggaaggctagatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttgttttaccaacagagtgacatgttttgaaaggattattgacgtggaaggctagatat 248

                                                          
Query: 241 tctcactagtgcaatgatcatagaactgaaatagccattttgtgact 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctcactagtgcaatgatcatagaactgaaatagccattttgtgact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)