BAC Information

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BAC

Clone NameMSMg01-159C15
Chromosome3 (Build37)
Map Location 42,724,845 - 42,725,130
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666031, LOC100039204
Downstream geneLOC100039219, LOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159C15.T7 (MSMg01no159_c15.b1)MSMg01-159C15.TJ (MSMg01no159_c15.g1)
ACCAG359180
length740740
length of high quality
(start - end)
---286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no159_c15.b1 PHD_FILE: MSMg01no159_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:50 2005CHROMAT_FILE: MSMg01no159_c15.g1 PHD_FILE: MSMg01no159_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAACTAGGGGATAGATATTAAATGAGA
AATAATATTTTCTTTGTTCTGCCCTTTAAAGTACTTTCTGATTTAGAGAA
GGAAAGGCAATTTATAGAAGATTGAATAATTTGAGTGTTTCTGTTGCTCC
ACACTACTTGATGAATGCTCTTTCGTTTTAGTGAGAAATACTATGACATT
GATGCTATGCCTTTCTTAGGCTTTGTAGCATAAGGCATATGCTGTGTGGT
TTGATTACTGCAAATCCAAATTTTGTTTAGTCAAGGTGATCACAAAGTGT
CTTTGTAGATTACTTGGCTTTCNAACTTATTCCCATATGTTTGTAATCAA
ATTTTAAAAGTTGGTCTGTGAAGTCCTCTAAAAGCTCAAATATAACCAGA
TGAAACATTAGAGAATTACAATCTCATTATTATAATTTAAGGAAAATACA
ATACGTAAATCTCAGTGAGCTATATGTTAGGTAATCAGTTCCTCATAGGT
GTGTGTGTGTGTGTGTGTGTGTGTACATAAGCAGAGAATATATATATATA
TATATATATATATATATATATTTATGAAGAAGATAAAATTAGCCATTTAT
AATTTCAGCGAACAGCTCTTTTTTGCAATATAGCTTTTATCAAGTTGCTC
ATATCTATTTGGAATTTTACTATTTAAAACCATATACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_c15.g1 MSMg01no159_c15.g1 CHROMAT_FILE:
MSMg01no159_c15.g1 PHD_FILE: MSMg01no159_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:50 2005
         (286 letters)



>mm_chr3_42724645_42725330
          Length = 686

 Score =  484 bits (250), Expect = e-141
 Identities = 277/286 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactaggggatagatattaaatgagaaataatattttctttgttctgccctttaaagta 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaactaggggatagatatttaatgagaaataatattttctttgttctgctctttaaagta 260

                                                                       
Query: 61  ctttctgatttagagaaggaaaggcaatttatagaagattgaataatttgagtgtttctg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttctgatttagagaaggcaaggcaatttatagaagattgaataatttgagtgtttctg 320

                                                                       
Query: 121 ttgctccacactacttgatgaatgctctttcgttttagtgagaaatactatgacattgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ttgctccacactacttgatgaatgctctttcgttttagtgagaaatactgtgacattgat 380

                                                                       
Query: 181 gctatgcctttcttaggctttgtagcataaggcatatgctgtgtggtttgattactgcaa 240
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gccatgcctttcttaggctttgtagcagaaggcatatgctgtgtggtttgattactgcaa 440

                                                         
Query: 241 atccaaattttgtttagtcaaggtgatcacaaagtgtctttgtaga 286
           || ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaaatcttgattagtcaaggtgatcacaaagtgtctttgtaga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)